PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G207600.2.p
Common NameGLYMA_13G207600, LOC100807580
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 257aa    MW: 28692.3 Da    PI: 4.9365
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G207600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC141.22.6e-4467167198
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fw+kq   i++atd++ h+lPlarikki+k+dedvk +saeaPv+++kace+fi+eltlr+w + ee +r+ +kk dia++++r+d
  Glyma.13G207600.2.p  67 QLNNFWAKQcqeIQEATDLRTHSLPLARIKKIMKSDEDVKLVSAEAPVVFAKACEMFIMELTLRAWANVEEDQRKIIKKHDIASSISRAD 156
                          799*****98889999************************************************************************** PP

                NF-YC  88 ifdflvdivpr 98 
                          +fdfl+d+vpr
  Glyma.13G207600.2.p 157 VFDFLIDTVPR 167
                          *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.19E-2659161IPR009072Histone-fold
PfamPF008081.2E-2089151IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.1E-3290167IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDQNQHVQPA QEAYGENQYQ SNPVTTPTVL PTQTSDSSLS SSYPRQHPND PQLEAMYELR  60
QERLQQQLNN FWAKQCQEIQ EATDLRTHSL PLARIKKIMK SDEDVKLVSA EAPVVFAKAC  120
EMFIMELTLR AWANVEEDQR KIIKKHDIAS SISRADVFDF LIDTVPRPLE NILDQQGFVG  180
LPTSTVPTPL NDACYHNPPP QALVPGNPYG SPRIAVGMPI LDQNHPGLQI HHFLTPMEPT  240
PTPTPNPQNP SPSSDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-4275167395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G207600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014621201.10.0nuclear transcription factor Y subunit C-2 isoform X1
RefseqXP_028187073.10.0nuclear transcription factor Y subunit C-2-like isoform X1
TrEMBLA0A445I7N10.0A0A445I7N1_GLYSO; Nuclear transcription factor Y subunit C-9 isoform B
TrEMBLK7M0W90.0K7M0W9_SOYBN; Uncharacterized protein
STRINGGLYMA13G27780.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.27e-50nuclear factor Y, subunit C2