PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G207600.1.p

Common Name

GLYMA_13G207600, LOC100807580

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YC

Protein Properties

Length: 268aa MW: 29991.8 Da PI: 5.2879

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G207600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	141	2.9e-44	78	178	1	98
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw+kq i++atd++ h+lPlarikki+k+dedvk +saeaPv+++kace+fi+eltlr+w + ee +r+ +kk dia++++r+d Glyma.13G207600.1.p 78 QLNNFWAKQcqeIQEATDLRTHSLPLARIKKIMKSDEDVKLVSAEAPVVFAKACEMFIMELTLRAWANVEEDQRKIIKKHDIASSISRAD 167 799***98889999********************************************************************** PP NF-YC 88 ifdflvdivpr 98 +fdfl+d+vpr Glyma.13G207600.1.p 168 VFDFLIDTVPR 178 *******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.53E-26	70	172	IPR009072	Histone-fold
Pfam	PF00808	1.3E-20	100	162	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.5E-32	101	178	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MQVHVYNNNA KMDQNQHVQP AQEAYGENQY QSNPVTTPTV LPTQTSDSSL SSSYPRQHPN 60 DPQLEAMYEL RQERLQQQLN NFWAKQCQEI QEATDLRTHS LPLARIKKIM KSDEDVKLVS 120 AEAPVVFAKA CEMFIMELTL RAWANVEEDQ RKIIKKHDIA SSISRADVFD FLIDTVPRPL 180 ENILDQQGFV GLPTSTVPTP LNDACYHNPP PQALVPGNPY GSPRIAVGMP ILDQNHPGLQ 240 IHHFLTPMEP TPTPTPNPQN PSPSSDC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-42	86	178	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G207600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014621201.1	0.0	nuclear transcription factor Y subunit C-2 isoform X1
Refseq	XP_028187073.1	0.0	nuclear transcription factor Y subunit C-2-like isoform X1
TrEMBL	A0A445I7N1	0.0	A0A445I7N1_GLYSO; Nuclear transcription factor Y subunit C-9 isoform B
TrEMBL	K7M0W9	0.0	K7M0W9_SOYBN; Uncharacterized protein
STRING	GLYMA13G27780.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22394	2	4
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	9e-50	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Glyma.13G207600.1.p
Entrez Gene	100807580