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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G039300.1.p | ||||||||
Common Name | GLYMA_02G039300, LOC100805376 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 392aa MW: 43268.9 Da PI: 6.8446 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.4 | 1.5e-17 | 55 | 104 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g Glyma.02G039300.1.p 55 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 104 59*******.**********93....35999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.115 | 55 | 112 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.4E-11 | 55 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-29 | 55 | 111 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.93E-30 | 55 | 111 | No hit | No description |
SuperFamily | SSF54171 | 3.33E-21 | 55 | 112 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-33 | 55 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 56 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 78 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MEEAMRRLNG VAPIIGPDSK GDGGLIANNP KRTSAVNKRA LREDGGGGGG GGAMRYRGVR 60 RRPWGRYAAE IRDPQSKERR WLGTFDTAEE AACAYDCAAR AMRGLKARTN FVYPTSPQPS 120 SATTEHLFPN FNNNNNFHKH SLFNHHRNRH ITGSNTCFDH PHSVDFSAPR NPSSLNMLLF 180 RDLIHSNPSL LSSSSTQNFH DQFYNKSTST FSSLPVSPSL APPSYSMNNS CGGSLSVKMN 240 TFPTCGTNFA EKGDDGDGFF SRESSDSGLL EEIVNKFLPR TKPSKCETTF ANPQEESLLL 300 PPLVSESTLV STGQQYYDDD MKKGFPKNEG LGVFYSDQGF PMQQFDTSNG FNSMAMENDQ 360 NIINNAENCV VEDVFQYQEL LNAFAIRMQN A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 43 | 111 | 2 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G039300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN590243 | 0.0 | JN590243.1 Glycine max ethylene-responsive transcription factor ESR1 (ESR1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003519832.1 | 0.0 | ethylene-responsive transcription factor ESR2 | ||||
TrEMBL | K7K6B8 | 0.0 | K7K6B8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G04460.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 8e-14 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G039300.1.p |
Entrez Gene | 100805376 |