PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G3885
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 230aa    MW: 26097.8 Da    PI: 9.3506
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G3885genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.3e-20765356
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                 +R+++t++ql  Lee++++  r+p+a+++++++++l    +++ ++V++WFqN++a+e+
  Gh_D05G3885  7 SRWCPTTQQLMMLEEMYRSgIRTPNANQIQQITSQLslygKIEGKNVFYWFQNHKARER 65
                 7*****************99*************************************98 PP
2Wus_type_Homeobox113.88.5e-37667364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++RW+Pt++Q+++Lee+y+sG+rtPn+++iq+it++L+ yGkie+kNVfyWFQN+kaRer +
        Gh_D05G3885  6 SSRWCPTTQQLMMLEEMYRSGIRTPNANQIQQITSQLSLYGKIEGKNVFYWFQNHKARERLR 67
                       79*********************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.009267IPR001356Homeobox domain
SMARTSM003897.9E-5471IPR001356Homeobox domain
SuperFamilySSF466891.63E-10765IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-7765IPR009057Homeodomain-like
PfamPF000461.4E-17765IPR001356Homeobox domain
CDDcd000861.99E-4865No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAPAGSSRWC PTTQQLMMLE EMYRSGIRTP NANQIQQITS QLSLYGKIEG KNVFYWFQNH  60
KARERLRLRK KLTKQLQQQQ QLYHQLQHNP HFLHYLDSPA SPAFQHLSCY NPASANLLFQ  120
AGIHDGGGKQ VTNYTWNIDI PENVDKNKAI MRMYGSDWLM MVDVGLPLSS LPCYSMISRP  180
PLKTLELFPV TASNLKEECN NINNNNSNSS NSLSSVSCNI TPAKVPVSLP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684752.11e-172PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLA0A1U8J3551e-171A0A1U8J355_GOSHI; WUSCHEL-related homeobox 3-like
STRINGGorai.009G103500.11e-170(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74802642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-35WOX family protein