PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32721_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 299aa    MW: 33886 Da    PI: 5.7786
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32721_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30131188258
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                                 +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers +dp+v++itY+ eHnh
  Cotton_A_32721_BGI-A2_v1.0 131 SDIWSWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSCSDPRVFIITYTAEHNH 188
                                 69*************************998**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-30116191IPR003657WRKY domain
PROSITE profilePS5081133.499125191IPR003657WRKY domain
SuperFamilySSF1182904.71E-26126191IPR003657WRKY domain
SMARTSM007748.9E-35130190IPR003657WRKY domain
PfamPF031061.6E-25132188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEHWDWQAVT GETCSNNDAF FSYMENPEFS FGPLSFQHGD EDHLMSFPKV FEPNPNVLDE  60
LMEELYKPFC PELNPYTIPV LEDHAEEPEC QKQQPLVVSG TNKDSTKPKR SRKKQQHRVV  120
KHVTGDAGLQ SDIWSWRKYG QKPIKGSPYP RSYYRCSSSK GCLARKQVER SCSDPRVFII  180
TYTAEHNHGH PTRRTSLAGS TRNKSLTVAK PKNLAYKNEP HEVAESTVLS PAVIKDESVK  240
QESITMEGGK ILTPDVMLSD ELVESFEGFG DLFVDQFPDL SHELWSMNES ATLTGGLLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-18118191274WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697900.0KF669790.1 Gossypium hirsutum WRKY transcription factor 61 (WRKY61) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605611.10.0PREDICTED: WRKY transcription factor 22-like isoform X2
TrEMBLA0A1U8NKN00.0A0A1U8NKN0_GOSHI; WRKY transcription factor 22-like isoform X2
STRINGGorai.008G250300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78102741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-42WRKY family protein