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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10017168m | ||||||||
Common Name | EUTSA_v10017168mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | WOX | ||||||||
Protein Properties | Length: 243aa MW: 27967.4 Da PI: 9.6757 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.2 | 7.6e-20 | 6 | 66 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a ++++++++l +++ ++V++WFqN++a++++ Thhalv10017168m 6 STRWCPTPEQLMILEEMYRSgIRTPNAVQIQQITAHLafygRIEGKNVFYWFQNHKARDRQ 66 58*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 120.3 | 8.1e-39 | 5 | 67 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 a+tRW+PtpeQ++iLee+y+sG+rtPn+ +iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk Thhalv10017168m 5 ASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQK 67 689***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.847 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.2E-4 | 4 | 71 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.66E-4 | 7 | 67 | No hit | No description |
SuperFamily | SSF46689 | 6.42E-11 | 7 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.6E-17 | 7 | 66 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-7 | 8 | 66 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MSPMASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH 60 KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISMMSQ PIHNIIDHHN PYHHHHLHHH 120 RPYDHMPFTC CSQPSPICLA HQGMGGGEAQ SKVVNEYYCN KSGPEEMLMQ KPITGPNSSY 180 GRDWMMMMDM GPRPSYPSSS SLSSSPIPCC NMMMNSPKIP PLKTLELFPI SSINSKQDRT 240 KL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10017168m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB058920 | 0.0 | AB058920.1 Arabidopsis thaliana PRS mRNA for PRESSED FLOWER, complete cds. | |||
GenBank | AY251397 | 0.0 | AY251397.1 Arabidopsis thaliana PRS/WOX3 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006409891.1 | 0.0 | WUSCHEL-related homeobox 3 | ||||
Swissprot | Q9SIB4 | 1e-117 | WOX3_ARATH; WUSCHEL-related homeobox 3 | ||||
TrEMBL | V4M522 | 1e-180 | V4M522_EUTSA; Uncharacterized protein | ||||
STRING | XP_006409891.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7480 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 2e-95 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10017168m |
Entrez Gene | 18028066 |
Publications ? help Back to Top | |||
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