PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047541.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 311aa    MW: 34687.4 Da    PI: 5.0362
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047541.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.7e-31139197259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k vers++dp+v+++tY+geHnh+
  EcC047541.40 139 SDMWAWRKYGQKPIKGSPHPRSYYRCSSSkGCLARKLVERSSSDPRVFVVTYTGEHNHT 197
                   79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-31124199IPR003657WRKY domain
PROSITE profilePS5081133.637133199IPR003657WRKY domain
SuperFamilySSF1182901.96E-26136199IPR003657WRKY domain
SMARTSM007741.6E-37138198IPR003657WRKY domain
PfamPF031064.1E-26140196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MNSVRVDDWD LQAVVRGCGV GESSYDIMDW MSWQSDADLR QEEILFGGFS DFAETSALLD  60
DLEQLYKPFY PEPEAVRDAG LIPEEVIEEA ENKLKEEEPL TDASTTSQAV HYEETKQRRR  120
KNQQKREVHH VTAADGVSSD MWAWRKYGQK PIKGSPHPRS YYRCSSSKGC LARKLVERSS  180
SDPRVFVVTY TGEHNHTHPT RRNALAGSTR NKFASPKAKQ PAIAKGNRPT PLANGPCDSP  240
SSAATRSPMT PPPVVTHSEE DKRQLSSNES GLSSGSDENN TVPTMFFSDE MFMGFEELND  300
MVMDPGVAGY S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-18126199274WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053209.10.0PREDICTED: WRKY transcription factor 22
TrEMBLA0A059CGI40.0A0A059CGI4_EUCGR; Uncharacterized protein
STRINGXP_010053209.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78102741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-43WRKY family protein