PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV40621.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

CAMTA

Protein Properties

Length: 896aa MW: 101053 Da PI: 8.6603

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV40621.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	164	2.5e-51	11	128	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 ++e k rwl+++ei+aiL n+ +++++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e ++ yYah+e++ptf rrcy KZV40621.1 11 MEEaKGRWLRPNEIYAILCNHGHFTVHVKPVNLPKSGTVVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNQERIHIYYAHGEDKPTFVRRCY 109 455599******************************************************************************************* PP CG-1 100 wlLeeelekivlvhylevk 118 wlL+++le+ivlvhy+e++ KZV40621.1 110 WLLDKSLEHIVLVHYRETQ 128 **************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.699	7	133	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.3E-72	10	128	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.5E-45	13	126	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	6.3E-11	360	447	IPR014756	Immunoglobulin E-set
CDD	cd00204	4.94E-16	545	655	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.5E-17	545	658	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	6.0E-7	545	625	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.89E-17	546	658	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.982	554	667	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.06	596	628	IPR002110	Ankyrin repeat
SMART	SM00248	4.9E-5	596	625	IPR002110	Ankyrin repeat
SMART	SM00248	2100	635	666	IPR002110	Ankyrin repeat
SMART	SM00015	85	740	762	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.272	744	770	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	7.97E-5	755	830	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	6.742	760	789	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	3.2E-4	782	804	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.017	783	807	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.9E-4	784	804	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	16	862	884	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	7.97E-5	862	890	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	8.224	864	892	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 896 aa Download sequence Send to blast
TWTDLDVGNM MEEAKGRWLR PNEIYAILCN HGHFTVHVKP VNLPKSGTVV LFDRKMLRNF 60 RKDGHNWKKK KDGKTVKEAH EHLKVGNQER IHIYYAHGED KPTFVRRCYW LLDKSLEHIV 120 LVHYRETQEF QGSQYVNSNS DSAASDPSAS WPSLEESDSA FGRVHYGDLT SRLEFRDSLT 180 TIKNHEQRLH EINTLEWDDL LLPDHSRNML AVHESKAEGF ELGNQYETKS CRISNNDIST 240 NKVSPESSAN SFFDQVSGRN SINNAFRSSE RYQAIGREKI ETLQVKGPGL LGEGIGLDDP 300 GQDGLQKQDS FGRWMTNIIA DSPESADCQA LEYSMLTVNQ PFTSQAVDNQ QTSSFRHVFN 360 ITELSPAWAV STEETKILVV GFFTDGRVSC TNSDLFLVCG DSIIAARVIQ DGVIRCMISP 420 QSPGVVSLYL SFDGHNPISQ VLTFEFRAPA VPKHEISSDD RPNWEEFQLQ LRLAHLMFSS 480 SKDLGAFSTK PSQNALKEAK AFAQKTSHVS NGWMSLTKIV EDSKISFPHA KDSLFELTLQ 540 NRLREWLLEK VVAGCKISER DKHGQGVIHL CAILGYTWAV YSFSCSSLSL DYRDKFGWTA 600 LHWAAYCGRE KMVAALLSAG AKANLVTDPT PGNPGGYTAA DLASKNGFDG LAAYLAETAL 660 VTQLNDMTLA GNVSGSLQPT ISGTVNSENL SEDELNLKET LAAYRTAADA AARIQVALSE 720 HSLKVRTKSI HSSNPEEEAR NIVAALKIQH AFRNHNTRKK MTAAARIQYR FRTFKMRKDF 780 LDKRQKAIKI QAAFRGFHAR RQYRKIVWSV GVLEKAILRW RLKRKGIRGI PIQPEETPKD 840 PTQEGNLEEE FFQASRKQAE DRVERSVVRV QAMFRSKKAQ EDYRRMKLAH KNVSVD

Sequence ? help Back to Top

Protein Sequence Length: 896 aa Download sequence Send to blast

TWTDLDVGNM MEEAKGRWLR PNEIYAILCN HGHFTVHVKP VNLPKSGTVV LFDRKMLRNF  60
RKDGHNWKKK KDGKTVKEAH EHLKVGNQER IHIYYAHGED KPTFVRRCYW LLDKSLEHIV  120
LVHYRETQEF QGSQYVNSNS DSAASDPSAS WPSLEESDSA FGRVHYGDLT SRLEFRDSLT  180
TIKNHEQRLH EINTLEWDDL LLPDHSRNML AVHESKAEGF ELGNQYETKS CRISNNDIST  240
NKVSPESSAN SFFDQVSGRN SINNAFRSSE RYQAIGREKI ETLQVKGPGL LGEGIGLDDP  300
GQDGLQKQDS FGRWMTNIIA DSPESADCQA LEYSMLTVNQ PFTSQAVDNQ QTSSFRHVFN  360
ITELSPAWAV STEETKILVV GFFTDGRVSC TNSDLFLVCG DSIIAARVIQ DGVIRCMISP  420
QSPGVVSLYL SFDGHNPISQ VLTFEFRAPA VPKHEISSDD RPNWEEFQLQ LRLAHLMFSS  480
SKDLGAFSTK PSQNALKEAK AFAQKTSHVS NGWMSLTKIV EDSKISFPHA KDSLFELTLQ  540
NRLREWLLEK VVAGCKISER DKHGQGVIHL CAILGYTWAV YSFSCSSLSL DYRDKFGWTA  600
LHWAAYCGRE KMVAALLSAG AKANLVTDPT PGNPGGYTAA DLASKNGFDG LAAYLAETAL  660
VTQLNDMTLA GNVSGSLQPT ISGTVNSENL SEDELNLKET LAAYRTAADA AARIQVALSE  720
HSLKVRTKSI HSSNPEEEAR NIVAALKIQH AFRNHNTRKK MTAAARIQYR FRTFKMRKDF  780
LDKRQKAIKI QAAFRGFHAR RQYRKIVWSV GVLEKAILRW RLKRKGIRGI PIQPEETPKD  840
PTQEGNLEEE FFQASRKQAE DRVERSVVRV QAMFRSKKAQ EDYRRMKLAH KNVSVD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV40621.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100788.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Refseq	XP_011100789.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2Z7C3Y3	0.0	A0A2Z7C3Y3_9LAMI; Calmodulin-binding transcription activator 6 (Fragment)
STRING	Migut.G00093.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]