PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g021624m

Common Name

CISIN_1g021624mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bZIP

Protein Properties

Length: 311aa MW: 33707.2 Da PI: 10.8079

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g021624m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.4	4.7e-16	232	283	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+ ee+ ++ orange1.1g021624m 232 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQEEMMEMQ 283 79*****************************************999999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-14	228	293	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.668	230	281	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.1E-15	232	282	No hit	No description
CDD	cd14707	3.55E-26	232	286	No hit	No description
SuperFamily	SSF57959	2.13E-11	232	282	No hit	No description
Pfam	PF00170	5.0E-14	232	284	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	235	250	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MPQAQRQQTL GEMTLEEFLV RAGVVREDLQ FGGGVGGKVN GNSGLFGDLS RSANNTGMGI 60 GFQQMGKGAS LMGNRNLETG NQINIQSSNL PLNVNGARMN QHPLAQQQHN QQTQQQPQQP 120 QIFPKQPAMA YATQMPLQSS PGIKSGIVVV GDQAMNGNLI QGGALQGGGM GMVGLGAPPV 180 GVSLGSPANQ LSSDGIGKSN GDTSSVSPVP YMFNGSLRGR RFNGNVEKVV ERRQRRMIKN 240 RESAARSRAR KQAYTMELEA EVAKLKEENE ELRKKQEEMM EMQKNQVLEM MNVQQGGKRR 300 CLRRTQTGPW *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.8945	0.0	callus\| fruit\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024952252.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X3
Swissprot	Q9M7Q4	3e-92	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A067GWQ2	0.0	A0A067GWQ2_CITSI; Uncharacterized protein
STRING	XP_006434756.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-68	abscisic acid responsive elements-binding factor 2

Link Out ? help Back to Top
Phytozome	orange1.1g021624m

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]