PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016182m
Common NameCISIN_1g014660mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 395aa    MW: 41881.5 Da    PI: 9.2171
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016182mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.74.5e-22251313163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+elkrerrkq+NRe+ArrsR+RK+ae eeL +kv++L  eN +Lk+e+++l+++++kl++e+
  orange1.1g016182m 251 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 313
                        89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.0E-21186IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.1E-24100232No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-17245311No hitNo description
PfamPF001704.7E-20251313IPR004827Basic-leucine zipper domain
SMARTSM003383.2E-20251315IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.622253316IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-11254311No hitNo description
CDDcd147021.71E-19256304No hitNo description
PROSITE patternPS000360258273IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGNNEDGKSF KSEKPSSPPP SDQGNIHMYT DWAAMQAYYG PRVAIPPYYN SPIASGHAPQ  60
PYMWGPAQGS HAHNHGVPTS PAAVTPLNTE APTKSSGNAD RGLAKKLKGL DGLAMSIGNA  120
SAESAEGGAE QRPSQSEADG STDGSDGNTV RAGQSRKKRS REGTPIAGGD GKTDIQSTPV  180
PVGVNATPDK VLATAVAPTS VSGKPVGPVL SPGMPTKLEL RNAPGMNVKA SPTSVPQPCA  240
VLPPETWIQN ERELKRERRK QSNRESARRS RLRKQAEAEE LSRKVDSLID ENASLKSEIN  300
QLSENSEKLR QENAALLEKL KSAQLGNKQE IVLNEDKRVT PVSTENLLSR VNNSGTVDRN  360
MEEGGHLFEK NSNSGAKLHQ LLDASPRTDA VAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267273RRSRLRK
2267274RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.116380.0callus| fruit
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920462e-72KR492046.1 UNVERIFIED: Citrus sinensis clone 215-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444899.10.0common plant regulatory factor 1 isoform X1
RefseqXP_006491223.10.0common plant regulatory factor 1 isoform X1
RefseqXP_006491224.10.0common plant regulatory factor 1 isoform X1
SwissprotQ990891e-124CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A067HEJ50.0A0A067HEJ5_CITSI; Uncharacterized protein
STRINGXP_006491223.10.0(Citrus sinensis)
STRINGXP_006444896.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.18e-90G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]