PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g005290m

Common Name

CISIN_1g0021441mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 705aa MW: 77219.6 Da PI: 5.8676

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g005290m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	2.9e-29	297	347	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ orange1.1g005290m 297 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 347 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.484	286	367	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-26	300	347	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.65E-23	603	692	No hit	No description
SMART	SM00666	9.1E-26	608	690	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.5E-27	608	689	No hit	No description
PROSITE profile	PS51745	25.265	608	690	IPR000270	PB1 domain
CDD	cd06407	2.97E-39	609	689	No hit	No description
Pfam	PF00564	5.5E-19	609	689	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence Send to blast
MLLNQICNEG RQNALAEILE ILSVVCETHK LPLAQTWVPC RHRSVLAYGG GLKKSCSSID 60 GSCMGQVCMS TTDVAFYVVD GHMWGFREAC VEHHLQKDQG VAGRAFFSLS SCFCKDITQF 120 CKTEYPLVHY ARMFGLTSCF AICLRSTYTG DDDYILEFFL PPAITDSYEQ QTLLGSILAT 180 MKQHFQSLKV ASGIDLEDDE GTIEIIEGEA TADKKLNLRM ESIRIPQSVR SPPQPHALPN 240 GGELGQLDIP EQQLMENFDY MNSRGNAVNV GGNDNPVSLL ENKNTRKLSE RKRGKTEKSI 300 SLEVLQQYFA GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS LTKLKRVIES 360 VQGTNGTFGL TSLTTSPLPV AVNSISWPSG LNGSNQQNSP NSKPELLGEK ILSPIYKTPG 420 SDGHTELEDR LSGGRMSTHE EHIHEQNALS PEIGKGKNSP KTGSGSREES DGSPTSHGSC 480 QGNPANESAP AKDVLVSSIH EPRFKVGGSL ELVFQPVKEM NLSAAFSIPD ALVTTEPQEP 540 FGGLLVEDAG SSKDLRNLCP AVADAIVDER LPENSCANLP CAELSPKQHL ATLSQTMPRV 600 YSRQEMKSVT IKATYREDII RFRISLSCGI LELKEEVAKR LKLELGTFDI KYLDDDQEWV 660 LIACDADLQE CLDISRSSGS NMIRLSIHDI MANLGSSCES TGEL*

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence Send to blast

MLLNQICNEG RQNALAEILE ILSVVCETHK LPLAQTWVPC RHRSVLAYGG GLKKSCSSID  60
GSCMGQVCMS TTDVAFYVVD GHMWGFREAC VEHHLQKDQG VAGRAFFSLS SCFCKDITQF  120
CKTEYPLVHY ARMFGLTSCF AICLRSTYTG DDDYILEFFL PPAITDSYEQ QTLLGSILAT  180
MKQHFQSLKV ASGIDLEDDE GTIEIIEGEA TADKKLNLRM ESIRIPQSVR SPPQPHALPN  240
GGELGQLDIP EQQLMENFDY MNSRGNAVNV GGNDNPVSLL ENKNTRKLSE RKRGKTEKSI  300
SLEVLQQYFA GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS LTKLKRVIES  360
VQGTNGTFGL TSLTTSPLPV AVNSISWPSG LNGSNQQNSP NSKPELLGEK ILSPIYKTPG  420
SDGHTELEDR LSGGRMSTHE EHIHEQNALS PEIGKGKNSP KTGSGSREES DGSPTSHGSC  480
QGNPANESAP AKDVLVSSIH EPRFKVGGSL ELVFQPVKEM NLSAAFSIPD ALVTTEPQEP  540
FGGLLVEDAG SSKDLRNLCP AVADAIVDER LPENSCANLP CAELSPKQHL ATLSQTMPRV  600
YSRQEMKSVT IKATYREDII RFRISLSCGI LELKEEVAKR LKLELGTFDI KYLDDDQEWV  660
LIACDADLQE CLDISRSSGS NMIRLSIHDI MANLGSSCES TGEL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX056270	0.0	KX056270.1 Citrus trifoliata transcription factor NLP7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006476342.1	0.0	protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A067GMR4	0.0	A0A067GMR4_CITSI; Uncharacterized protein
STRING	XP_006476342.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	orange1.1g005290m

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]