PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g002144m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 961aa MW: 106084 Da PI: 5.2277

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g002144m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92	4.3e-29	553	603	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ orange1.1g002144m 553 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 603 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.484	542	623	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-26	556	603	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.25E-23	859	948	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.3E-27	864	945	No hit	No description
PROSITE profile	PS51745	25.265	864	946	IPR000270	PB1 domain
SMART	SM00666	9.1E-26	864	946	IPR000270	PB1 domain
Pfam	PF00564	8.4E-19	865	945	IPR000270	PB1 domain
CDD	cd06407	5.84E-39	865	945	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 961 aa Download sequence Send to blast
MPEPDEENQT RYMPPAPPRT KEVTFMASSI MDVDVVDLDL DNPWPSDQMG FVSNPMSPFL 60 ISEQPCSPLW AFSDADNDDK LSGHNPDGYC MIKERITQAL RYFKDSTEQH VLAQVWVPVK 120 VGGRYVLTTS GQPFVLDPHS NGLHQYRMVS LMYMFSVDGE SDGELGLPGR VFWQKLPEWT 180 PNVQYYSSKE YSRLDHALHH NVRGTMALPV FEPSGQSCVA VIELIMTSQK INYAPEVDKV 240 CKALEAVNLK SSEILDYPST QICNEGRQNA LAEILEILSV VCETHKLPLA QTWVPCRHRS 300 VLAYGGGLKK SCSSIDGSCM GQVCMSTTDV AFYVVDGHMW GFREACVEHH LQKDQGVAGR 360 AFFSLSSCFC KDITQFCKTE YPLVHYARMF GLTSCFAICL RSTYTGDDDY ILEFFLPPAI 420 TDSYEQQTLL GSILATMKQH FQSLKVASGI DLEDDEGTIE IIEGEATADK KLNLRMESIR 480 IPQSVRSPPQ PHALPNGGEL GQLDIPEQQL MENFDYMNSR GNAVNVGGND NPVSLLENKN 540 TRKLSERKRG KTEKSISLEV LQQYFAGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI 600 NKVNRSLTKL KRVIESVQGT NGTFGLTSLT TSPLPVAVNS ISWPSGLNGS NQQNSPNSKP 660 ELLGEKILSP IYKTPGSDGH TELEDRLSGG RMSTHEEHIH EQNALSPEIG KGKNSPKTGS 720 GSREESDGSP TSHGSCQGNP ANESAPAKDV LVSSIHEPRF KVGGSLELVF QPVKEMNLSA 780 AFSIPDALVT TEPQEPFGGL LVEDAGSSKD LRNLCPAVAD AIVDERLPEN SCANLPCAEL 840 SPKQHLATLS QTMPRVYSRQ EMKSVTIKAT YREDIIRFRI SLSCGILELK EEVAKRLKLE 900 LGTFDIKYLD DDQEWVLIAC DADLQECLDI SRSSGSNMIR LSIHDIMANL GSSCESTGEL 960 *

Sequence ? help Back to Top

Protein Sequence Length: 961 aa Download sequence Send to blast

MPEPDEENQT RYMPPAPPRT KEVTFMASSI MDVDVVDLDL DNPWPSDQMG FVSNPMSPFL  60
ISEQPCSPLW AFSDADNDDK LSGHNPDGYC MIKERITQAL RYFKDSTEQH VLAQVWVPVK  120
VGGRYVLTTS GQPFVLDPHS NGLHQYRMVS LMYMFSVDGE SDGELGLPGR VFWQKLPEWT  180
PNVQYYSSKE YSRLDHALHH NVRGTMALPV FEPSGQSCVA VIELIMTSQK INYAPEVDKV  240
CKALEAVNLK SSEILDYPST QICNEGRQNA LAEILEILSV VCETHKLPLA QTWVPCRHRS  300
VLAYGGGLKK SCSSIDGSCM GQVCMSTTDV AFYVVDGHMW GFREACVEHH LQKDQGVAGR  360
AFFSLSSCFC KDITQFCKTE YPLVHYARMF GLTSCFAICL RSTYTGDDDY ILEFFLPPAI  420
TDSYEQQTLL GSILATMKQH FQSLKVASGI DLEDDEGTIE IIEGEATADK KLNLRMESIR  480
IPQSVRSPPQ PHALPNGGEL GQLDIPEQQL MENFDYMNSR GNAVNVGGND NPVSLLENKN  540
TRKLSERKRG KTEKSISLEV LQQYFAGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI  600
NKVNRSLTKL KRVIESVQGT NGTFGLTSLT TSPLPVAVNS ISWPSGLNGS NQQNSPNSKP  660
ELLGEKILSP IYKTPGSDGH TELEDRLSGG RMSTHEEHIH EQNALSPEIG KGKNSPKTGS  720
GSREESDGSP TSHGSCQGNP ANESAPAKDV LVSSIHEPRF KVGGSLELVF QPVKEMNLSA  780
AFSIPDALVT TEPQEPFGGL LVEDAGSSKD LRNLCPAVAD AIVDERLPEN SCANLPCAEL  840
SPKQHLATLS QTMPRVYSRQ EMKSVTIKAT YREDIIRFRI SLSCGILELK EEVAKRLKLE  900
LGTFDIKYLD DDQEWVLIAC DADLQECLDI SRSSGSNMIR LSIHDIMANL GSSCESTGEL  960
*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX056270	0.0	KX056270.1 Citrus trifoliata transcription factor NLP7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006476342.1	0.0	protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2H5NHG8	0.0	A0A2H5NHG8_CITUN; Uncharacterized protein (Fragment)
STRING	XP_006476342.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	orange1.1g002144m

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]