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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.286530.1 | ||||||||
Common Name | Csa_5G598600, LOC105435700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 286aa MW: 32139.9 Da PI: 6.399 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.8e-19 | 2 | 51 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp++ + r +lg+f+taeeAa+a++ a+++++g Cucsa.286530.1 2 RYRGVRRRP-WGRYAAEIRDPNS---KERRWLGTFDTAEEAARAYDCAARAMRG 51 59*******.**********832...4999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.5E-35 | 2 | 65 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.748 | 2 | 59 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-30 | 2 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.44E-32 | 2 | 58 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-22 | 2 | 59 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-13 | 2 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 3 | 14 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 25 | 41 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MRYRGVRRRP WGRYAAEIRD PNSKERRWLG TFDTAEEAAR AYDCAARAMR GLKARTNFVY 60 PSTPSSPHSL SDQLLSPLNF AKQSQISRHL ATSSNWSTFS NAHTFDYPEP ASHQKINPPP 120 SFLNMLLPPH DIQNPNFVSS APQFPHVDCQ YQYPKSSFTS LPIEKDDFLH DSEFIPKEPS 180 SSGLLEEIIN GFFPKPLNKT QNPQSSNDMS SISSEANFGY SVVDQQPGLS FNYQSGPVQA 240 PEEMSFVNGL PMNVQMGMES GNLIMENLLQ YPEFFNAYVA KIQNA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-20 | 2 | 58 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011656252.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR2-like | ||||
TrEMBL | A0A0A0KTJ2 | 0.0 | A0A0A0KTJ2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004155411.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 7e-21 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.286530.1 |
Entrez Gene | 105435700 |
Publications ? help Back to Top | |||
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