PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.136780.1
Common NameCsa_6G012810, LOC101215431
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 411aa    MW: 45612.8 Da    PI: 4.7961
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.136780.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1869119155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta eAa a+++a++ ++g
  Cucsa.136780.1  69 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAIEAALAYDEAARTMYG 119
                     56*****999.**********8...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-1369119IPR001471AP2/ERF domain
CDDcd000181.01E-3069128No hitNo description
SMARTSM003801.1E-3670133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-3170128IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-2070127IPR016177DNA-binding domain
PROSITE profilePS5103221.50970127IPR001471AP2/ERF domain
PRINTSPR003671.6E-97182IPR001471AP2/ERF domain
PRINTSPR003671.6E-993109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MISETIERKR KSRSRRDRST VAETLAKWKA YNECFDSSNN GGKLIRKAPA KGSKKGCMKG  60
KGGPLNSHCN YRGVRQRTWG KWVAEIREPN RGSRLWLGTF PTAIEAALAY DEAARTMYGQ  120
TARLNLPNIK NRGQLQGILL EEYLGLRNSD SSTTTSACSE STTTTSNQSE VCVPEEFTMR  180
PRLVSLNVKT EDGEGESKTC DHGDETATPM NQVKHEDRND QLVALGAEFP CLDQLENFQM  240
DEMFEPRTGT QAGHMVMPVS LEKQVKDEDL DAVYCGRSDD QAVLSEAGVP SLYDLHNFQM  300
DELFDVEELL SLINSDSLHD PTNIVKGNAD AYTNMAPSHV GSVGSEKPPN RSYQIQNPDA  360
KLLGSPQQME RTLADVDYGF DFLKQGREED LNAAADDCVR YLNEIGDLGF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1770127260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-1770134570ATERF1
3gcc_A1e-1770134570ATERF1
5wx9_A7e-1759133378Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1916RKSRSRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138558.10.0PREDICTED: dehydration-responsive element-binding protein 2C isoform X2
TrEMBLA0A0A0KBP30.0A0A0A0KBP3_CUCSA; Dehydration-responsive element-binding protein 2C
STRINGXP_004138558.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-37ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]