PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024860m
Common NameCARUB_v10024860mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TALE
Protein Properties Length: 611aa    MW: 68489.8 Da    PI: 7.9203
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024860mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82e-094654972254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ++yp+ ++++ LA++++L+ +qV++WF N R +
  Carubv10024860m 465 HPYPTDSDKQMLATQTSLSRNQVSNWFINARVR 497
                      89*****************************88 PP
2BELL96.91.8e-31332400472
             BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +++ k+akLl l+eeV+k Yk y++qlqtv+ssF+ vagl++a+pY+slAlk+iSr+F++L++ai+eq+
  Carubv10024860m 332 KNRLKRAKLLVLQEEVCKMYKLYNHQLQTVVSSFDSVAGLNTAAPYISLALKQISRSFKALRTAISEQL 400
                      5789***************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.3E-48263398IPR006563POX domain
PfamPF075261.0E-29268397IPR006563POX domain
PROSITE profilePS5007111.807438501IPR001356Homeobox domain
CDDcd000867.22E-11441502No hitNo description
SMARTSM003891.2E-9441505IPR001356Homeobox domain
SuperFamilySSF466893.46E-16443507IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-26444505IPR009057Homeodomain-like
PfamPF059206.8E-18458497IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MDMIKPDLHV AQQIRRDKFR VEQMNDFSNT WGHDHQNIRI PNNLDLIGIL QNQIPVPVQT  60
DLYQDSTTTF MNMPQSIHRG HPQGSSNWRS CDLSQPRSEV GDFFSNHFSS RNQILDRPLY  120
VGRDTIAQSS MTSRSEVPCL KDNQKGSVTF LGQNNLENIV TVACSGTGNE TSKSTYDRGT  180
LSGSYRGELM FLPGLENHSV AHNASQWNHR SSCKEPMNFS ATSHTNKKGF SLSLSSEVTP  240
FRDSGDVAVL SMMNMNGPLG PFTGYASILK SSRFLEPAQN MLEDFCISNA LRTISGSEST  300
SMDNDDSSEI LSSTNHAVDG FSSSSSEALE PKNRLKRAKL LVLQEEVCKM YKLYNHQLQT  360
VVSSFDSVAG LNTAAPYISL ALKQISRSFK ALRTAISEQL KQISSTQDSS SGDNNIFQKQ  420
QRSLIGNNVD FESQQQQQHI WRPQRGLPER AVAALRAWLF DHFLHPYPTD SDKQMLATQT  480
SLSRNQVSNW FINARVRLWK PMVEEIHMLE TKVIKSKDSI YNMEQSSIRP NILSSLPNRK  540
QTLKDLSGSK RPRVDYVCDS GMNMMGFNRG LGNVSLTLGL MHGVDNVIQT RTSQDHDHQI  600
GTGGQMFHDF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-14447505563Homeobox protein Meis2
3k2a_B5e-14447505563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for specifying floral primordia and establishing early internode patterning events during inflorescence development. {ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024860m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1191531e-156AK119153.1 Arabidopsis thaliana At2g27990 mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL21-50-D24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295740.10.0BEL1-like homeodomain protein 8
SwissprotQ9SJJ30.0BLH8_ARATH; BEL1-like homeodomain protein 8
TrEMBLR0HX260.0R0HX26_9BRAS; Uncharacterized protein
STRINGXP_006295740.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143211520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.10.0BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]