PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold11849-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 137aa    MW: 15565.7 Da    PI: 10.5782
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold11849-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-2074123255
                                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                                           +y+GVr+++ +g+W++eIr p     r  kr++lg+f taeeAa+a+++a+ k++g
  augustus_masked-scaffold11849-abinit-gene-0.0-mRNA-1  74 RYRGVRQRP-WGKWASEIRNP-----ReaKRVWLGTFKTAEEAARAYDKAAIKFRG 123
                                                           8********.**********9.....446*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.00E-3273134No hitNo description
SuperFamilySSF541711.31E-2174134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-3274133IPR001471AP2/ERF domain
PfamPF008476.4E-1474123IPR001471AP2/ERF domain
SMARTSM003805.7E-3674137IPR001471AP2/ERF domain
PROSITE profilePS5103224.96174132IPR001471AP2/ERF domain
PRINTSPR003671.8E-127586IPR001471AP2/ERF domain
PRINTSPR003671.8E-1297113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MHHIRVTKEE EHDILVSAFK HVITDGVDTL TPQQLQILEA LQGSSTAASS LPSTSGASCN  60
TRKKKKKKDD NEKRYRGVRQ RPWGKWASEI RNPREAKRVW LGTFKTAEEA ARAYDKAAIK  120
FRGPSRAKLN FPLSDYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2373133464ATERF1
3gcc_A6e-2373133464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16167RKKKKKK
26168RKKKKKKD
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886787.11e-84ethylene-responsive transcription factor ERF071-like
SwissprotP930072e-27EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLA0A2N9FQR64e-48A0A2N9FQR6_FAGSY; Uncharacterized protein
STRINGXP_010666622.12e-36(Beta vulgaris)
STRINGXP_010098462.13e-36(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-21redox responsive transcription factor 1