PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold10126-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 359aa    MW: 40004.2 Da    PI: 4.5949
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold10126-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-19130179255
                                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                           +++GVr+++ +g+W+AeIrdp     r  r +lg++ taeeAa  +++a+ kl+g
  augustus_masked-scaffold10126-abinit-gene-0.0-mRNA-1 130 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYETAEEAAMVYDNAAIKLRG 179
                                                           89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-29129187IPR001471AP2/ERF domain
CDDcd000181.14E-32130186No hitNo description
SuperFamilySSF541713.79E-21130187IPR016177DNA-binding domain
PfamPF008473.1E-12130179IPR001471AP2/ERF domain
PROSITE profilePS5103223.565130187IPR001471AP2/ERF domain
SMARTSM003803.5E-38130193IPR001471AP2/ERF domain
PRINTSPR003675.3E-10131142IPR001471AP2/ERF domain
PRINTSPR003675.3E-10153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDQSILCPIK YTEHRNVTKK HTKPHKAVSS DGRKHIEPRV VRISVTDPDA TDSSSDEEQE  60
NYFFLRRQRV RRYVNEINIE TSSKAAVVVS NPRKRPAAES AAASPSRKVR QVNKASSTAA  120
GAAATPNGRK FRGVRQRPWG KWAAEIRDPA RRVRLWLGTY ETAEEAAMVY DNAAIKLRGP  180
DALTNFVTPP PPTRQKPEIN VASVSSCDSG DEFHNLSSPT SVLHYRTQSS EEEEAEPPKQ  240
EPEPVHEPVQ QSSEPQQLVG EDLFQECQGE TSVPDDLGDF FSFDLPCFDD AFNFSAPDPP  300
ILFEPPLLFD EPIPDDIFKD DFGALFGDSF GSTSTSTTMN QGDDYFDDIL FGLDPLVDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21128186362ATERF1
3gcc_A3e-21128186362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908546.10.0ethylene-responsive transcription factor CRF4
TrEMBLA0A2N9EMZ31e-163A0A2N9EMZ3_FAGSY; Uncharacterized protein
STRINGXP_010097869.11e-120(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-66cytokinin response factor 4