PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold06740-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 285aa    MW: 31604.7 Da    PI: 7.2844
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold06740-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.33e-2184134256
                                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                                            y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  augustus_masked-scaffold06740-abinit-gene-0.0-mRNA-1  84 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAFKLRGE 134
                                                           59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.04E-3583143No hitNo description
Gene3DG3DSA:3.30.730.101.1E-3284142IPR001471AP2/ERF domain
PROSITE profilePS5103223.30184141IPR001471AP2/ERF domain
SMARTSM003801.2E-3984147IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2484142IPR016177DNA-binding domain
PfamPF008478.2E-1585134IPR001471AP2/ERF domain
PRINTSPR003672.4E-118596IPR001471AP2/ERF domain
PRINTSPR003672.4E-11107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGLEQQSGTI GLNHLTPSQI LQIQAQVQLQ QQQQQQIAAL ASASLQNQRL NQWQHQKANN  60
LNFHLGPKAV PMKHVGTPPK PTKLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA  120
ALAYDKAAFK LRGEFARLNF PHLKHQGAHI SGEFGDYKPL HSSVDAKLQA ICQSLANSQK  180
QGKTEDPCVV SDTKPTIPIP PAPLNANSVF DGLPKPELKK EIGFLEVEDC KVENPSSSSS  240
DDSSSLAGSC SPESDISFLE LTKWDDIENF GLDKFPSVEI DWAAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2283141160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874430.11e-173ethylene-responsive transcription factor RAP2-4-like
TrEMBLA0A2N9HKS21e-162A0A2N9HKS2_FAGSY; Uncharacterized protein
STRINGcassava4.1_010367m1e-118(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.18e-58related to AP2 4