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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C010425P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 364aa MW: 39899.1 Da PI: 6.4224 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.2 | 6.6e-21 | 179 | 228 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g MELO3C010425P1 179 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDEAAFKLRG 228 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.03E-35 | 178 | 238 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-33 | 179 | 237 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-41 | 179 | 242 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-23 | 179 | 236 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.551 | 179 | 236 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 180 | 191 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.2E-15 | 180 | 228 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 202 | 218 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MAAAMDFYNE GSQTDHFGGE LMEAIVPFIK VASSSSSSLS TFPSSSSSSS SPTPYLPPHY 60 SSSFNTHLNF SHSASQQSNL YPNGCSTSMN PVFSDGFSTQ NLIGFEQPFT IGPHQLSSSQ 120 IPHSQPQNSF LQNQTPLAFA WGEQNYQPPS SSEQQTPSFL APKPIPMKQV GSSSKPTKLY 180 RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD TAEEAALAYD EAAFKLRGDS ARLNFPNLKH 240 QGSCVEGEFG EYRPLHSSVA AKLQAICDNL AKPQKQGNSK KPVTAAKKSR SQFCSMAEET 300 AAVKVENSSS RAVTESDGSE ASSPLSDLTF PDFTELPWDQ NQAWENSMLE KYPSEIDWAS 360 ILS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 178 | 236 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681867 | 0.0 | LN681867.1 Cucumis melo genomic scaffold, anchoredscaffold00013. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008444109.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-13-like | ||||
Swissprot | Q8H1E4 | 4e-79 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A1S3BAC8 | 0.0 | A0A1S3BAC8_CUCME; ethylene-responsive transcription factor RAP2-13-like | ||||
STRING | XP_008444109.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 2e-66 | related to AP2 4 |
Publications ? help Back to Top | |||
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