PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008318P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 414aa    MW: 45755.8 Da    PI: 4.5389
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008318P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1869119155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta eAa a+++a++ ++g
  MELO3C008318P1  69 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAIEAALAYDEAARTMYG 119
                     56*****999.**********8...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-1369119IPR001471AP2/ERF domain
CDDcd000181.03E-3069128No hitNo description
Gene3DG3DSA:3.30.730.109.5E-3170128IPR001471AP2/ERF domain
SMARTSM003801.1E-3670133IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-2070127IPR016177DNA-binding domain
PROSITE profilePS5103221.50970127IPR001471AP2/ERF domain
PRINTSPR003671.6E-97182IPR001471AP2/ERF domain
PRINTSPR003671.6E-993109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MISETIERKR KSRSRRDRST VAETLAKWKA YNECFDSSND GGKLIRKAPA KGSKKGCMKG  60
KGGPLNSHCN YRGVRQRTWG KWVAEIREPN RGSRLWLGTF PTAIEAALAY DEAARTMYGQ  120
TARLNLPNIK NRGQLQGILL EDYLGLRNSD SSTTTSTCSE STTTTSNQSE VCVPEEFTVR  180
PQLVPLNVKS EDGEGESRTG DHGDETATPM CLENQVKHED CNGQTAALVA EFPCLDQLQN  240
FQMAEIFEPR TGPQTGPMLT PLSLEKQVKD EDLDAVYRER SDDQAVLSEA GISSLYDLQN  300
FEMDEMFDVE ELLSLISSDS LHDPTNILKG NADGYTSMVP SQVGSIGSEK PPNSSYQMQN  360
PDAKLLGSPQ QMERTPADVD YGFDFLKQGR EEDLNAAADD CVRYLNEIGD LGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1770127260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-1770134570ATERF1
3gcc_A1e-1770134570ATERF1
5wx9_A5e-1759133378Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1916RKSRSRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441483.10.0PREDICTED: dehydration-responsive element-binding protein 2C isoform X2
TrEMBLA0A1S3B3390.0A0A1S3B339_CUCME; dehydration-responsive element-binding protein 2C isoform X2
STRINGXP_008441482.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.14e-32ERF family protein