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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C006688P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 25576.1 Da PI: 7.5962 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.4 | 5.6e-21 | 91 | 141 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+G+r+++ +g+W+AeIrdp + r++lg++ taeeAa+a+++a+ +++g MELO3C006688P1 91 SKYRGIRQRP-WGKWAAEIRDPQ----KgLRVWLGTYNTAEEAARAYDQAAIRIRG 141 89********.**********94....34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.03E-23 | 91 | 150 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-14 | 91 | 141 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.83E-36 | 91 | 150 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-33 | 92 | 150 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.856 | 92 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-40 | 92 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 93 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MCGGAIISDY VEPNPVVVDN LLWPDLDTTL FSDLLGLDLS GTQNYLFNNT TPSANVVHNI 60 PKQLSQVKKE RVEGNEGATS EMKKPQKVRK SKYRGIRQRP WGKWAAEIRD PQKGLRVWLG 120 TYNTAEEAAR AYDQAAIRIR GKKAKLNFPH PPPPPSLPLP LPLPPSLPQQ QQQQLPTTSA 180 TPFDVELKHQ ISTLESFLGL DPSPPVEPTA DLWWVDDLLT YQQQNLQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-25 | 91 | 150 | 13 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008438910.1 | 1e-166 | PREDICTED: ethylene-responsive transcription factor RAP2-3 isoform X1 | ||||
TrEMBL | A0A1S3AY54 | 1e-165 | A0A1S3AY54_CUCME; ethylene-responsive transcription factor RAP2-3 isoform X1 | ||||
STRING | XP_008438910.1 | 1e-166 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4892 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-24 | ethylene-responsive element binding protein |