PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc03_g01050

Common Name

GSCOC_T00025708001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

CAMTA

Protein Properties

Length: 920aa MW: 104100 Da PI: 6.8875

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc03_g01050	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	166.1	5.8e-52	25	141	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 +e k rwl+++ei+aiL n+++++++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+nptf rrcy Cc03_g01050 25 EEaKGRWLRPNEIHAILCNYKHFNVQVKPVNLPPSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNPTFVRRCY 122 45599******************************************************************************************* PP CG-1 100 wlLeeelekivlvhylevk 118 wlL+++le++vlvhy+e++ Cc03_g01050 123 WLLDKSLEHVVLVHYRETQ 141 **************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	78.415	20	146	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.4E-75	23	141	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.7E-46	26	139	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	3.64E-11	371	458	IPR014756	Immunoglobulin E-set
CDD	cd00204	3.46E-15	550	665	No hit	No description
SuperFamily	SSF48403	3.73E-18	551	670	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.5E-16	553	669	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.069	561	677	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	10.873	606	638	IPR002110	Ankyrin repeat
SMART	SM00248	3.4E-4	606	635	IPR002110	Ankyrin repeat
SMART	SM00248	3800	645	674	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	7.43E-6	717	820	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	6.888	754	780	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	29	769	791	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.272	770	796	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.006	792	814	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.036	793	817	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.002	794	814	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	8.7	872	894	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.718	874	902	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 920 aa Download sequence Send to blast
MAAIAGSEIH GFRTMKDLDI GNILEEAKGR WLRPNEIHAI LCNYKHFNVQ VKPVNLPPSG 60 TIVLFDRKML RNFRKDGHNW KKKKDGKTVK EAHEHLKVGN EERIHVYYAH GEDNPTFVRR 120 CYWLLDKSLE HVVLVHYRET QEGSPSTPLN SNSSSALSDP SQSLVISEES DSAADRAYYS 180 RERADLDPNC SVNIKDHELR LHEINTLEWD ELLVQDDPNK LIGPQEGKYS SELSYQYGMN 240 GYGITSDSIS DNKLPVESYL EKFPGQVSMN NSGNLNVPAN LCFQTMGAPT ANLLLKDSEQ 300 MTLFAGDSLE HASKDGLQTQ DSFGKWISNV IADSPLPLDD TTLDSSMSTN QSFASPHMNI 360 PQFSAAKQIF NITEISPSWA LSSEETKILV VGYFHEGQSN LSRPNLFCIC GNACAHAEPV 420 QSGVFRCVVS PQAPAFVNLF LSFDGHTSIS QVVMFEFRAP IVDNPAISEE RSSWEEFEVQ 480 MRLAHLLFST SRSFNILSTK VTPTALKEAK NFARKTSHIK NHWEFLTKSI KAKEMSFPDA 540 KNCLFELTLQ NRLLEWLLER VAEGCQISER DEQGQGVIHL CAILGYTWAV YPFSWSGLSI 600 DYRDKFGWTA LHWAAYYGRE PMVAKLLTAG AKANLVTDPT SENPGGFTAA DLASKNGHEG 660 LGAYLAEKAL VQHFQDMTLA GNVSGSLQTA KSDSVEPGNF SEDELYLKDT LAAYRTAADA 720 AARIQAAFRE HSLKVQTLAV ESSNPEIEAR NIVAAMKIQH AFRNFETRKK MAAAARIQHS 780 FRTWKMRRDF LNMRRQAIRI QAVFRGFQVR KQYRKIIWSV GVLEKAILRW RLKRKGFRGL 840 HVNPDEVVNN QKEENDVEED FFRASRKQAE ERVERSVVRV QAMFRSKLAQ EEYRRMKLAY 900 NNAAREYEEF ENPDGMRED*

Sequence ? help Back to Top

Protein Sequence Length: 920 aa Download sequence Send to blast

MAAIAGSEIH GFRTMKDLDI GNILEEAKGR WLRPNEIHAI LCNYKHFNVQ VKPVNLPPSG  60
TIVLFDRKML RNFRKDGHNW KKKKDGKTVK EAHEHLKVGN EERIHVYYAH GEDNPTFVRR  120
CYWLLDKSLE HVVLVHYRET QEGSPSTPLN SNSSSALSDP SQSLVISEES DSAADRAYYS  180
RERADLDPNC SVNIKDHELR LHEINTLEWD ELLVQDDPNK LIGPQEGKYS SELSYQYGMN  240
GYGITSDSIS DNKLPVESYL EKFPGQVSMN NSGNLNVPAN LCFQTMGAPT ANLLLKDSEQ  300
MTLFAGDSLE HASKDGLQTQ DSFGKWISNV IADSPLPLDD TTLDSSMSTN QSFASPHMNI  360
PQFSAAKQIF NITEISPSWA LSSEETKILV VGYFHEGQSN LSRPNLFCIC GNACAHAEPV  420
QSGVFRCVVS PQAPAFVNLF LSFDGHTSIS QVVMFEFRAP IVDNPAISEE RSSWEEFEVQ  480
MRLAHLLFST SRSFNILSTK VTPTALKEAK NFARKTSHIK NHWEFLTKSI KAKEMSFPDA  540
KNCLFELTLQ NRLLEWLLER VAEGCQISER DEQGQGVIHL CAILGYTWAV YPFSWSGLSI  600
DYRDKFGWTA LHWAAYYGRE PMVAKLLTAG AKANLVTDPT SENPGGFTAA DLASKNGHEG  660
LGAYLAEKAL VQHFQDMTLA GNVSGSLQTA KSDSVEPGNF SEDELYLKDT LAAYRTAADA  720
AARIQAAFRE HSLKVQTLAV ESSNPEIEAR NIVAAMKIQH AFRNFETRKK MAAAARIQHS  780
FRTWKMRRDF LNMRRQAIRI QAVFRGFQVR KQYRKIIWSV GVLEKAILRW RLKRKGFRGL  840
HVNPDEVVNN QKEENDVEED FFRASRKQAE ERVERSVVRV QAMFRSKLAQ EEYRRMKLAY  900
NNAAREYEEF ENPDGMRED*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027115917.1	0.0	calmodulin-binding transcription activator 5-like
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A068TRD5	0.0	A0A068TRD5_COFCA; Uncharacterized protein
STRING	XP_009609050.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]