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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10030044m | ||||||||
Common Name | CICLE_v10030044mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TCP | ||||||||
Protein Properties | Length: 204aa MW: 22945.9 Da PI: 9.1693 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 62.8 | 1.3e-19 | 29 | 106 | 4 | 78 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaess 78 k++ + ++h+kv+gRd RvR++ ++ arf +Lq+eLG++ +++ti+WLl+ p+ + s+++a+ +++++ Ciclev10030044m 29 KQRCNTDRHAKVDGRDCRVRVPELTLARFIQLQRELGHKNNGQTIQWLLNHVPPSHFPEPTVSNKTANPNpnpNPNND 106 566789*********************************************999876666554444433322222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 15.116 | 33 | 87 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.1E-15 | 33 | 115 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MAPINLQLAK NSTQKKPKTR QLFKNPNNKQ RCNTDRHAKV DGRDCRVRVP ELTLARFIQL 60 QRELGHKNNG QTIQWLLNHV PPSHFPEPTV SNKTANPNPN PNPNNDNNNV SSSVSLVTAG 120 SFLHAALPIT STVETERMPE ESLEVEIHCH KHLSPVDIFK HLDCLYVRAT IHYFNGFETF 180 DTVGNRECLR SGRCFRSGQG SNC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024035684.1 | 1e-102 | transcription factor TCP16 | ||||
TrEMBL | V4SL44 | 1e-149 | V4SL44_9ROSI; Uncharacterized protein | ||||
STRING | XP_006424521.1 | 1e-150 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM33369 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 3e-17 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10030044m |
Entrez Gene | 18035259 |