PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027814m
Common NameCICLE_v10027814mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 841aa    MW: 92467 Da    PI: 7.1848
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027814mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.7e-096436801954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Ciclev10027814m 643 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 680
                      564459******************************87 PP
2BELL93.71.7e-30496565372
             BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       e q+ +akLl l+eeV krYk y++qlq+v+ssFe vagl  a+pY+slA kaiS++FrcLk ai++q+
  Ciclev10027814m 496 PEYQEMRAKLLYLQEEVSKRYKLYHQQLQMVVSSFESVAGLSGATPYVSLAFKAISKNFRCLKSAIMNQL 565
                      6889999************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.8E-37395563IPR006563POX domain
PfamPF075268.3E-40400561IPR006563POX domain
PROSITE profilePS5007111.855621684IPR001356Homeobox domain
CDDcd000864.67E-11624685No hitNo description
SMARTSM003891.8E-8624688IPR001356Homeobox domain
SuperFamilySSF466897.27E-17626692IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-27627688IPR009057Homeodomain-like
PfamPF059204.0E-18641680IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MDMNNFRPQS SHVAQQSRRD KLRIQQHLED LSEHSNLEQS SSVNVRNGIS FYDSSTTLVS  60
SSELINFSAN SSALTAQREA MGHQELSDSH HQHDQHSNTS RPIMTGGDLF TILPHTAVAS  120
SHHFRATGDH FQGCCDLKGL DHSQSISEWM VNYASGSSGR ESNQNVMLDG EVVSNNSNAT  180
SRKFLRPNNY NEYQDHVQST SVNQPSEKLF GDMHYATPIF PNTVQDVVTL ASVGTHGLEV  240
ASLLQQNNAR ETGHVTWTDH SGNELVLLPS YGNQTSAIRY SDPSNWTSRP AAESFHQWST  300
ESGLRNVASD AATQGLSLSL SSNPPSDEMN VGHFAGGYES QNLHFKTDSR SGNSSLLGSF  360
PKPSIIRKGS GKSVQDMGTS SYNVHRNTGP LGPFTGYATI LKNSRFLKPA QELLDEFCCV  420
KKSKYGRRGN VSERFSGDRA SASASAEADA ADVADREVGA KGKNSTSRVS SPTFYSSNQI  480
SCEGGVGSSS GESHRPEYQE MRAKLLYLQE EVSKRYKLYH QQLQMVVSSF ESVAGLSGAT  540
PYVSLAFKAI SKNFRCLKSA IMNQLKHVAK ALGEEMRSSA TVTSSSRGHI TNTSAKLNCL  600
DQILQKHKSG GANVGFLEPQ QHVWRPQRGL PERAVAILRA WLFEHFLHPY PTDTDKHMLA  660
TQTGLSRNQV SNWFINARVR VWKPMVEEIH MLETQGSVAT NQDFKTKTDG QSLSDGTAGS  720
SFNGDQPMND KLAISAMSDE HVDYSGIGSS RSNNEEGLNA EHWNQEKRSR VDSNHRLTTS  780
MDRSLMGFIP YQRSMIEVGG LSAVSLTLGL RHGVESSPQQ QQEDQLRRQY GGQLIHDFAG  840
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16630687158Homeobox protein Meis1
4xrs_B4e-16630687158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424531.10.0uncharacterized protein LOC18034446
RefseqXP_024035728.10.0uncharacterized protein LOC18034446
RefseqXP_024035729.10.0uncharacterized protein LOC18034446
TrEMBLV4SL530.0V4SL53_9ROSI; Uncharacterized protein
STRINGXP_006424531.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143211520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.18e-69BEL1-like homeodomain 8