PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005366m
Common NameCICLE_v10005366mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 339aa    MW: 35922.3 Da    PI: 8.6133
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005366mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.92.6e-3655171583
              TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................. 65 
                      +++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt                                 
  Ciclev10005366m  55 RRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTgtvpaiavsvngtlkipttspakpageelprkr 148
                      7899*********************************************************666666666666666664444443333333333 PP

              TCP  66 .ssssasec....eaesssssas 83 
                       + + +se+    e++sssss+s
  Ciclev10005366m 149 rKRPCNSEFidinEQHSSSSSSS 171
                      32222222222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-2658174IPR005333Transcription factor, TCP
PROSITE profilePS5136927.51258112IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDPQQEPTVP MKEEALTDPE NQECDHSALQ PMGLVQVPMV PAAPPISRSQ KLVPRRPSKD  60
RHTKVEGRGR RIRMPATCAA RIFQLTRELG HKSDGETIRW LLEHAEPAII EATGTGTVPA  120
IAVSVNGTLK IPTTSPAKPA GEELPRKRRK RPCNSEFIDI NEQHSSSSSS SQSSLSSGLA  180
PITPTTTSYH NNNINNSISA GQGFVPLWPM GAFMLQAAQS GVVSCGTVSN QAQLWAFPAA  240
ATPIFNLQTR PISSFVSATA QSSEGQGSDG VLGSCSSSGT TTTATTSASV SNSATTTTST  300
TQMLRDFSLQ IYDKKELQFL GKPAAATTSN QQTTCSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144151PRKRRKRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00064PBMTransfer from AT5G51910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421818.10.0transcription factor TCP19
SwissprotQ9LT892e-83TCP19_ARATH; Transcription factor TCP19
TrEMBLV4RLH20.0V4RLH2_9ROSI; Uncharacterized protein
STRINGXP_006421818.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.22e-77TCP family protein