PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g029050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 326aa    MW: 37135.5 Da    PI: 5.016
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g029050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.14e-27958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++ +l  +s
  Csa17g029050.1  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSERLSLFS 58
                    79******************************************998776 PP
2K-box16.14.6e-07109176976
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 
                      ++   + lq+e+ +L++++++ ++e+R++  + L   s+ + +  e+qL + l+++ +++++ll ++
  Csa17g029050.1 109 ENDIALQDLQREVCRLQQQLQMAEEELRRYEPDPLRFTSMDDYEVCEKQLLDTLTHVLQRRDHLLSSH 176
                     45667899********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.987161IPR002100Transcription factor, MADS-box
CDDcd002652.00E-34275No hitNo description
SuperFamilySSF554554.32E-29283IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SERLSLFSGK  60
TRIEDVFTRF INLSKQERES AYYLPDHNRH PDIQSKECLL RILQQLKTEN DIALQDLQRE  120
VCRLQQQLQM AEEELRRYEP DPLRFTSMDD YEVCEKQLLD TLTHVLQRRD HLLSSHHLSS  180
YEASTMQQSI AGPFVNDVVE GWLPESGHNQ AHLFDASAHS NQLRELSSAM YEPLLQGSSS  240
SSNQNNMSEC HVTNHNGEMF PEWAQTYSSS ALFASMQQQQ HGGVVPSIDE MMPAQQGDIP  300
AVTTEAQADR EVSEYETGAP QLSSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A1e-15270168Myocyte-specific enhancer factor 2A
3mu6_B1e-15270168Myocyte-specific enhancer factor 2A
3mu6_C1e-15270168Myocyte-specific enhancer factor 2A
3mu6_D1e-15270168Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g029050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0564570.0DQ056457.1 Arabidopsis thaliana MADS-box family protein (At1g22130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477469.10.0PREDICTED: agamous-like MADS-box protein AGL104
SwissprotQ9LM460.0AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLR0I2E60.0R0I2E6_9BRAS; Uncharacterized protein
STRINGXP_010477469.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.10.0AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]