PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27991s0131.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TALE
Protein Properties Length: 613aa    MW: 68751.8 Da    PI: 7.5295
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27991s0131.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-094705022254
                           SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           ++yp+ ++++ LA++++L+ +qV++WF N R +
  Bostr.27991s0131.1.p 470 HPYPTDSDKQMLASQTSLSRNQVSNWFINARVR 502
                           89*****************************88 PP
2BELL98.36.2e-32341409472
                  BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           +++ k+akLl l+eeV+krYk y++qlqtv+ssF+ vagl++a pY+slAlk+iSr+F +L++ai+eq+
  Bostr.27991s0131.1.p 341 KNRLKRAKLLFLQEEVCKRYKLYNHQLQTVVSSFDSVAGLNTAVPYISLALKQISRSFNALRTAISEQL 409
                           5789***************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.7E-51273407IPR006563POX domain
PfamPF075265.5E-30278406IPR006563POX domain
PROSITE profilePS5007111.92443506IPR001356Homeobox domain
CDDcd000863.14E-11446507No hitNo description
SMARTSM003891.0E-9446510IPR001356Homeobox domain
SuperFamilySSF466893.04E-16448512IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-26449510IPR009057Homeodomain-like
PfamPF059206.4E-18463502IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MDMIKPELHI AQQIRRDKFR VEQMNDFPNT WDHHHHQHQN IKIPSNLDLI GILQNQISVP  60
VQTDLYQDST TTFMNMPQSI HRDPQGSSNW RISDLSQPSS VNCLAVNYGY DQAGFRPSNV  120
GDLFSNHFSS RNQILDRPLY VGRDTIAQSS MTSRSEVSFL KDNQNIVTVA CSGTGNETSK  180
SSYDRGSPSG SYRGELVFLP SLENQSVAPN ASQWNHGSSC KELLNYTATS HTNNKGFSLS  240
LSSEVTPFRD GGNAAVSPTM NIHGHLSPLG PFTGYASILK SSRFLEPAQK MLEEFCISYA  300
LKNISGSEST SMDNDDSSGM LSSTNHTDDG FSSFSELLEP KNRLKRAKLL FLQEEVCKRY  360
KLYNHQLQTV VSSFDSVAGL NTAVPYISLA LKQISRSFNA LRTAISEQLK QISSQYSSGG  420
DNNGFQKQQR SLIGNNVGFE SQQHIWRPQR GLPERSVAVL RAWLFDHFLH PYPTDSDKQM  480
LASQTSLSRN QVSNWFINAR VRLWKPMVEE IHMLETKAIK KTDTTYNMEP SNRPDTVSSP  540
SCKQRLMDLP GTKRSRLDYV CDSDMNMMGF NRGLGNVSLT LELRHGVDNV IQTQTQDHQF  600
GTGGQMFHEF VG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-144495031065Homeobox protein PKNOX1
3k2a_A3e-14452510563Homeobox protein Meis2
3k2a_B3e-14452510563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for specifying floral primordia and establishing early internode patterning events during inflorescence development. {ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27991s0131.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010510706.10.0PREDICTED: BEL1-like homeodomain protein 8
SwissprotQ9SJJ30.0BLH8_ARATH; BEL1-like homeodomain protein 8
TrEMBLR0HX260.0R0HX26_9BRAS; Uncharacterized protein
STRINGBostr.27991s0131.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143211520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.10.0BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]