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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009140922.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 234aa MW: 27143.2 Da PI: 9.5053 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62 | 9.1e-20 | 7 | 66 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Lee++++ r+p+a ++++++++l +++ ++V++WFqN++a++++ XP_009140922.1 7 TRWCPTPEQLMILEEMYRSgIRTPNAVQIQQITAHLafygRIEGKNVFYWFQNHKARDRQ 66 7*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 119.7 | 1.2e-38 | 6 | 67 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 tRW+PtpeQ++iLee+y+sG+rtPn+ +iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk XP_009140922.1 6 ATRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQK 67 79***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0021 | 4 | 71 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.25E-4 | 7 | 67 | No hit | No description |
Pfam | PF00046 | 1.7E-17 | 7 | 66 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-11 | 7 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-7 | 8 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.766 | 12 | 67 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSPVAATRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH 60 KARDRQKLRK KLAKQLHQQQ HHLQLQLQHI QPNPISQPLS NIIDPHNHYH HHYNHHRPYD 120 HMSFACCSQP SPICLSHQAI GVEAQSKVLS EHYCNKSGRE DMLMQKPITG QNTSYGRDWM 180 MMMMDMGPRP SYPSSSSVPV PYCNMMMNSP KIPLKTLELF PISSINSKQD SSKL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed in the L1 cells of the lateral regions of a flower primordium at early stage 1, in which the lateral sepals are expected to develop at a later stage. It then rapidly decreases at the late stage 1 and disappears at stage 2. At stage 3, it reappears in all four-sepal young primordia. Not detected at the central zone of the inflorescence meristem and the floral meristem. In stages 4 through 6, when four sepals develop to enclose the flower bud, it is localized at the lateral edges of the four sepals and forms an arch of the L1 cells at the margin of sepals. Expressed in the young primordia of petals and stamens. As the petals and stamens develop, it is limited at the margins of petals and stamens in a way similar to that of sepals. In the vegetative phase, it is expressed at the lateral regions of young leaf primordia, as well as in flowers and floral organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:14711878}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aerial parts of seedlings, inflorescences and flowers at low level. Expressed in a restricted number of L1 cells at the lateral regions of flower primordia. {ECO:0000269|PubMed:11751640}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009140922.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB058920 | 1e-105 | AB058920.1 Arabidopsis thaliana PRS mRNA for PRESSED FLOWER, complete cds. | |||
GenBank | AY251397 | 1e-105 | AY251397.1 Arabidopsis thaliana PRS/WOX3 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140922.1 | 1e-176 | PREDICTED: WUSCHEL-related homeobox 3 | ||||
Swissprot | Q9SIB4 | 1e-109 | WOX3_ARATH; WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A078H1Q6 | 1e-175 | A0A078H1Q6_BRANA; BnaA04g16520D protein | ||||
TrEMBL | A0A397Y3Y3 | 1e-175 | A0A397Y3Y3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F3N8 | 1e-175 | M4F3N8_BRARP; Uncharacterized protein | ||||
STRING | Bra035688.1-P | 1e-176 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7480 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 3e-96 | WOX family protein |
Publications ? help Back to Top | |||
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