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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009137410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Nin-like | ||||||||
Protein Properties | Length: 959aa MW: 105353 Da PI: 5.7113 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.2 | 3.7e-29 | 589 | 640 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ XP_009137410.1 589 AEKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 640 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55781 | 2.26E-5 | 213 | 284 | IPR029016 | GAF domain-like |
PROSITE profile | PS51519 | 17.723 | 579 | 660 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.3E-26 | 592 | 640 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 6.54E-23 | 860 | 948 | No hit | No description |
PROSITE profile | PS51745 | 27.911 | 863 | 945 | IPR000270 | PB1 domain |
Pfam | PF00564 | 4.7E-19 | 863 | 944 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.4E-26 | 863 | 945 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 7.8E-27 | 863 | 945 | No hit | No description |
CDD | cd06407 | 1.00E-33 | 864 | 944 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 959 aa Download sequence Send to blast |
MCDPADDDTA RNGVTPPASS RRSREILMDV DDLDLDGSWP LDQIPYLSSA SRMISPIFVS 60 SSSEQPCSPL WAFSDGGVNG NHGGYDGEKI TSASGVSSFR LADYPLFLPY ASSSSVAETT 120 TEKHSSFQFP SPLMSLVPSE NADNYCVIKE RMTQALRYFK ESTEQHVLAQ VWAPVRKNGR 180 DLLTTLGQPF VLNPNGNGLN QYRMISLTYM FSVDSDCDVE LGLPGRVFRQ KLPEWTPNVQ 240 YYSSKEFSRL DHALHYNVRG TLALPVFNPS DESCIGVVEL IMTSEKIHYA PEVDKVCKAL 300 EAVNLKSSEI LDHQTTQICN ESRQNALAEI LEVLTVVCET HNLPLAQTWV PCQHGSVLAN 360 GGGLKKNCTS FDGSCRGQVC MSTTDMACYV VDAHVWGFRD ACLEHHLQKG QGVAGRAFLN 420 GGSCFCRDIT KFCKTQYPLV HYALMFKLTS CFAISLQSSY TGDDSYILEF FLPSTITDDQ 480 EQDSLLGSLL VTMKEHFQSL RVASGVDFGE DDDKLSFEII QALPDKKIQS KIESIRVPFS 540 GFKSNATERL LIPQPAAQSS NPANEKVNVA SANGVAKEKK KTEKKRGKAE KTISLDVLQQ 600 YFTGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKIKKV NRSITKLKRV IESVQGTDGG 660 LDLTSMAVSS IPWTNGQTGA QPLNSPSGSK PPELPNTNHS PNHWSSDHSP QEPNGSPELP 720 SNGHKRSRTG DESAGTPTSH GSCDGNQLDE TKVPNQDPLF TVGASPGLCF PPYSRDHDVS 780 AASFAIPNRL LGNIDHSRGM PIEDAGSSKD LRNLCSSTPF DDKFPESNWM NNDNNSNNNM 840 YAPAKEEAVA NTTREPSGSE MRTVTIKASY KEDIIRFKIS SGSGIMELKD EVAKRLKLDA 900 GTFDIKYLDD DNEWVLIACD VDLQECLDIP RSSRTNIVRL LVHDVTTNLG SSCESTGEL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269|PubMed:18826430}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009137410.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228452 | 0.0 | AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13. | |||
GenBank | BT005776 | 0.0 | BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009137410.1 | 0.0 | PREDICTED: protein NLP7-like | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | M4DRV8 | 0.0 | M4DRV8_BRARP; Uncharacterized protein | ||||
STRING | Bra019251.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2507 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |