![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm_27.model.AmTr_v1.0_scaffold00057.97 | ||||||||
Common Name | AMTR_s00057p00119300, LOC18445160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 105aa MW: 11926 Da PI: 4.0865 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.2 | 1.6e-12 | 52 | 93 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + ++++E+ l+++ +++lG + W++Ia +++ gRt++++k +w evm_27.model.AmTr_v1.0_scaffold00057.97 52 LEFSEDEEALIIRMFRLLGER-WTLIAGRIP-GRTAEEIKQYWA 93 579******************.*********.***********6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.624 | 46 | 100 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-9 | 50 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-11 | 53 | 93 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-14 | 53 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.89E-10 | 53 | 92 | No hit | No description |
SuperFamily | SSF46689 | 2.89E-9 | 54 | 95 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 105 aa Download sequence Send to blast |
MGMTESDQSS YDISDKSQGN QEIGAMGMTE SDQSSYDISD KSQEETIQDR SLEFSEDEEA 60 LIIRMFRLLG ERWTLIAGRI PGRTAEEIKQ YWATRRSTSF QVNE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006855365.1 | 6e-70 | MYB-like transcription factor ETC1 isoform X1 | ||||
TrEMBL | U5D5X4 | 1e-68 | U5D5X4_AMBTC; Uncharacterized protein | ||||
STRING | ERN16832 | 2e-69 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3921 | 8 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46410.1 | 3e-17 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm_27.model.AmTr_v1.0_scaffold00057.97 |
Entrez Gene | 18445160 |
Publications ? help Back to Top | |||
---|---|---|---|
|