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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT31390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ARF | ||||||||
Protein Properties | Length: 989aa MW: 108973 Da PI: 6.3847 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.2 | 4.9e-21 | 162 | 249 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k lt sd++++g +++p++ ae+ ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F EMT31390 162 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI 249 89*********************999*****9555555.49**********************************************96 PP | |||||||
2 | Auxin_resp | 113.5 | 1.9e-37 | 309 | 391 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaas++s F+++YnPr+s+s Fvv+v++++ka +++ svGmR+ m+fete+ss+rr++Gt+vgvsd+dp+rWpnSkWr+L+ EMT31390 309 AAHAASSGSSFTIYYNPRTSPSPFVVPVARYNKANYIQQSVGMRMAMMFETEESSKRRYTGTIVGVSDSDPMRWPNSKWRNLQ 391 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-40 | 153 | 312 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-36 | 155 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.59E-19 | 161 | 261 | No hit | No description |
PROSITE profile | PS50863 | 11.265 | 162 | 285 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-18 | 162 | 260 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.7E-19 | 162 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.0E-33 | 309 | 391 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.3E-10 | 882 | 972 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.301 | 885 | 969 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 7.36E-9 | 902 | 964 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006346 | Biological Process | methylation-dependent chromatin silencing | ||||
GO:0007155 | Biological Process | cell adhesion | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0016246 | Biological Process | RNA interference | ||||
GO:0031048 | Biological Process | chromatin silencing by small RNA | ||||
GO:0045010 | Biological Process | actin nucleation | ||||
GO:0048439 | Biological Process | flower morphogenesis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0051567 | Biological Process | histone H3-K9 methylation | ||||
GO:0071555 | Biological Process | cell wall organization | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 989 aa Download sequence Send to blast |
MAAASQEKQQ QLLPTFGVLR NAAALLDEMQ LMGEAQGAKK VINSELWHAC AGPLVCLPQR 60 GSLVYYFPQG HSEQVAATTK KTPNSRIPNY PSLPSQLLCQ VHNITMHVRL LGSSSGSGVG 120 ADKDTDEVYA QMTLQPVNSE TDVFPIPSLG SYAKSKHPAE YFCKNLTASD TSTHGGFSVP 180 RRAAEKLFPQ LDYSMQPPNQ ELIVRDLHDN MWTFRHIYRG QPKRHLLTTG WSLFVGAKRL 240 KAGDSVLFIR FPLGEFVRVE RPFLTKVTGF RDEKSQLLVG VRRATNQQTA LSSSVLSTDS 300 MHIGVLAAAA HAASSGSSFT IYYNPRTSPS PFVVPVARYN KANYIQQSVG MRMAMMFETE 360 ESSKRRYTGT IVGVSDSDPM RWPNSKWRNL QIEWDEHGYG ERLERVSIWD IETPENTIVF 420 PSASLNSKRQ CLPGYGVPGL DIASVNMSPF QRAPGNPYGN LPHMPAVGSE LAMMMFLNQS 480 GQNMGTPLSC HQSSYSSIIQ NVKQNYMPPS TFGHPIGSIK PESMPSNEAQ QQQLHAPKMQ 540 RGDSESCEVQ PAADSVSASE LHVAGREPRN TDKYPSQSIS EQNGKGEPRV KPRRSKKGSS 600 RKTISENSEL SSAPSRICDD QQHVSEAELV SCDTKHVNCG NNEGSSGALT HGDFAGQLQC 660 QQVEQNELVS PPKLESSISP DGGKSVNSFP NQASFSQFFD GLDWMVQPPN YQDSNGIQSV 720 SASENIFSPS ANIGSTINTD TLETFQNSCL SDCFPNSIQD FIGSPDLHSL TFLSPEMQNL 780 DVHHDGSNVP STSNSYVQMS FSEDDSGNHM ESMQRGMNNI SSCSQPQTTE GFNLGMYSKL 840 PSLKESQVLS LPEIHNSSRG TSSCSMDAAE YSIGRSAKPM KPPVRTYTKV QKLGSVGRSI 900 DVTRYRDYRE LRSAIASMFG LQGKLEHPAS SDWKLVYVDY ENDVLLVGDD PWEEFINCVR 960 CIRILSPSEV QQMSENGMQV LNDCIQADQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 23 | 414 | 31 | 390 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369930 | 0.0 | AK369930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101F12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160868.1 | 0.0 | auxin response factor 11 isoform X1 | ||||
Swissprot | Q01K26 | 0.0 | ARFK_ORYSI; Auxin response factor 11 | ||||
Swissprot | Q8S983 | 0.0 | ARFK_ORYSJ; Auxin response factor 11 | ||||
TrEMBL | M8C287 | 0.0 | M8C287_AEGTA; Auxin response factor | ||||
STRING | EMT31390 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8673 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Publications ? help Back to Top | |||
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