PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 880553 | ||||||||
Common Name | ARALYDRAFT_679997 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 336aa MW: 38182.6 Da PI: 4.6843 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.3 | 7.5e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++++l +s 880553 9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFS 58 79******************************************998776 PP | |||||||
2 | K-box | 19 | 6e-08 | 121 | 191 | 9 | 79 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 + +++ e+l++e+ +L++++++ ++e+R++ + + +++e + e+qL + l+++ +++++l+ ++++ 880553 121 AINSDVEELEHEVCRLQQQLQMAEEELRRYEPDPVRFTTMEEYEVYEKQLLDTLTHVVQRRDHLMSNHLSS 191 5567899************************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.973 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.03E-28 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.73E-34 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 9.9E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-24 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK 60 TRIEDVFTRF INLPKQERES ALYFSDQNRR PDIQNKECLL RILQQLKSEN DIALQLTNPA 120 AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPVRFTTM EEYEVYEKQL LDTLTHVVQR 180 RDHLMSNHLS SYEASTMQQS IGGPFVNDGV EGWLPENGPN QTHLFDASAH SNQLRELSSA 240 MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HGGVGPSIEE 300 MMPAQQGDIP AVTAEAQPDH EVSDYETKVP QLSSQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 7e-16 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 7e-16 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 7e-16 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 7e-16 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
6bz1_A | 8e-16 | 1 | 90 | 1 | 91 | MEF2 CHIMERA |
6bz1_B | 8e-16 | 1 | 90 | 1 | 91 | MEF2 CHIMERA |
6bz1_C | 8e-16 | 1 | 90 | 1 | 91 | MEF2 CHIMERA |
6bz1_D | 8e-16 | 1 | 90 | 1 | 91 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 880553 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ056457 | 0.0 | DQ056457.1 Arabidopsis thaliana MADS-box family protein (At1g22130) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002893213.1 | 0.0 | agamous-like MADS-box protein AGL104 | ||||
Swissprot | Q9LM46 | 0.0 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | D7KL04 | 0.0 | D7KL04_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0001_2320 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2179 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 0.0 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | 880553 |
Entrez Gene | 9329274 |
Publications ? help Back to Top | |||
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