PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK35376.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 233aa MW: 27442.4 Da PI: 4.8119 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5.2e-18 | 35 | 86 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le Fe++ + +++ +LA++lgL+ rqV +WFqN+Ra++k KFK35376.1 35 KRFSEEQIKSLELIFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 86 68*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.8 | 6e-38 | 33 | 124 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +++r+s+eq+k+LE Fe+e++Lep++Kv+lareLglqprqva+WFqn+RAR+k+kqlEk+y+ L+++y++l+++ e ++ke+++L +el++ KFK35376.1 33 NQKRFSEEQIKSLELIFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLEKEYNILRANYNNLATQFEIMKKEKQTLVSELQR 124 689************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.85E-17 | 18 | 90 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.0E-13 | 25 | 92 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 17.07 | 28 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.07E-13 | 34 | 89 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-18 | 34 | 95 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.5E-15 | 35 | 86 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 6.7E-6 | 59 | 68 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 63 | 86 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.7E-6 | 68 | 84 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.9E-15 | 88 | 128 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009615 | Biological Process | response to virus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEDGDFFNCC FNEINSGMTM NKKKMKNKKS NHNQKRFSEE QIKSLELIFE SETRLEPRKK 60 VQLARELGLQ PRQVAIWFQN KRARWKSKQL EKEYNILRAN YNNLATQFEI MKKEKQTLVS 120 ELQRLNEEIH KSNEERHDQE CCGEQGVALS SNTESDNGKS ELEGRLNQGM IMCNDDIKTE 180 YFGFEEETNH EFMNIVEQAD DSCLTSSDNW GGFNSDSLLD QSSSNYPWWD FWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00013 | PBM | Transfer from AT3G61890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK35376.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009138744.1 | 1e-136 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | Q9M276 | 1e-120 | ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12 | ||||
TrEMBL | A0A087GZS4 | 1e-171 | A0A087GZS4_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GZS4 | 1e-172 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2498 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 1e-119 | homeobox 12 |
Publications ? help Back to Top | |||
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