PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold38962-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 219aa    MW: 23969.4 Da    PI: 4.4873
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold38962-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-194393155
                                               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                                      ++y+GVr+++ +g+WvAeIr+ps     kr +lg+f ta +Aa a+++a+  ++g
  snap_masked-scaffold38962-abinit-gene-0.1-mRNA-1 43 CHYRGVRQRS-WGKWVAEIREPSG---GKRLWLGTFKTAVDAASAYDEAASTMYG 93
                                                      79*****999.**********953...3**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-124393IPR001471AP2/ERF domain
CDDcd000185.49E-3343102No hitNo description
Gene3DG3DSA:3.30.730.103.0E-3144102IPR001471AP2/ERF domain
SMARTSM003802.1E-3744107IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-2144102IPR016177DNA-binding domain
PROSITE profilePS5103221.49644101IPR001471AP2/ERF domain
PRINTSPR003679.3E-104556IPR001471AP2/ERF domain
PRINTSPR003679.3E-106783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDNPDQKKRK RKTRGDSVSE TLAKWTKKGC CMKGRGGPEN PRCHYRGVRQ RSWGKWVAEI  60
REPSGGKRLW LGTFKTAVDA ASAYDEAAST MYGSSAQLNF PDITSRTSPM ESVKDCCWTS  120
SESVPYSTLG SPVGSESTTA ATPSEFCADE DSLYYLVTEA DMPSLVGIED EDESTGVSEF  180
CADGGTLYYP VTEAKDESTC MAKYFGENGQ ENLLDSSEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2144101260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1611KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916289.11e-128dehydration-responsive element-binding protein 2A-like
SwissprotQ8LFR22e-35DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A1L6CAW91e-46A0A1L6CAW9_9ROSI; AP2/ERF domain-containing transcription factor (Fragment)
TrEMBLA0A1L6CB531e-46A0A1L6CB53_VERFO; AP2/ERF domain-containing transcription factor (Fragment)
STRINGcassava4.1_029110m3e-44(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.14e-31ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]