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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
orange1.1g043551m |
Common Name | CISIN_1g043551mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
AP2 |
Protein Properties |
Length: 409aa MW: 45539.8 Da PI: 8.6345 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g043551m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 39.6 | 1.3e-12 | 71 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++gr++A+++d s+n +r k + g ++ +e Aa+a++ a++k++g
orange1.1g043551m 71 SKYRGVSRHRWTGRYEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 127
89*******************88887786625555.********************98 PP
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2 | AP2 | 45.7 | 1.6e-14 | 167 | 215 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+GV+ ++ + rW+A+I + g +k+ +lg++gt eeAa a++ a+ + +g
orange1.1g043551m 167 RGVSKHHHNRRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEHRG 215
8**************99966...3.6**********************99886 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 409 aa
Download sequence Send
to blast |
MENGAVKSGG RGGDMEAVLV PACIINKRRR RERDPSLGIG FNNVNQQVEQ QADQAAAATT 60 AAAATTVKRS SKYRGVSRHR WTGRYEAHLW DKGSWNPTQR KKGKQGAYDE EESAARAYDL 120 AALKYWGTST FTNFPVSEYE KEIEIMKTVT REEYLATLRR RSSGFSRGVS KHHHNRRWEA 180 RIGRVFGNKY LYLGTYGTQE EAAHAYDIAA IEHRGINAVT NFDISTYIRW LKPAAGGNSH 240 NPAFQEPKPI LEYSPPTSSL LSNHILTEGH QITDISIFND SNPFPLQDQD IPKKQDSFQA 300 NIKSSLPFSP CTKSSSSSPT ALSLLLRSSV FKELVEKNPN NSAEVNIEEN DTKNGPKIGS 360 KNEVEETLYD EFVINNPVQY ICPSSKICVS FLSSGRTEAL DFNCSMAL*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 96 | 104 | PTQRKKGKQ |