PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043400m
Common NameCISIN_1g043400mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 265aa    MW: 29830.3 Da    PI: 8.7021
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043400mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.9e-21110160155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ++++GVr+++ +grW+AeIrdp   ++rkr +lg+f+t+eeAa  +++a+ kl+g
  orange1.1g043400m 110 KKFRGVRRRP-WGRWAAEIRDP---NRRKRLWLGTFDTPEEAASVYDQAAVKLKG 160
                        59********.**********8...335************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.3E-664264IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000188.73E-34110169No hitNo description
PROSITE profilePS5103224.46111168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-30111169IPR001471AP2/ERF domain
PfamPF008479.9E-14111160IPR001471AP2/ERF domain
SMARTSM003804.6E-37111174IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-22111169IPR016177DNA-binding domain
PRINTSPR003671.0E-9112123IPR001471AP2/ERF domain
PRINTSPR003671.0E-9134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSPKSNMIIK FTEHVVTTDK PIISTPGPQK LVRIILTDAD ATDSSSDDEQ VINHVRRVKR  60
HVKQINLNNH HRRQHQQQQR GQQSNKLQHN KKIKRHAHQP PPQSDVTHRK KFRGVRRRPW  120
GRWAAEIRDP NRRKRLWLGT FDTPEEAASV YDQAAVKLKG ANAVTNFPNP VLTGDDVVSG  180
QRQRTGVDSF DSSDISSLSS PTSVLRYDEF TPFDSCLCYG DGDGDVFGFG YEVPLSLPDL  240
MLSGTSLSED AFGEFDVNDF LVEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-211111771481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115134RRRPWGRWAAEIRDPNRRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432055.11e-167pathogenesis-related genes transcriptional activator PTI6
RefseqXP_006464955.11e-167pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A067D1F50.0A0A067D1F5_CITSI; Uncharacterized protein
STRINGXP_006464955.11e-167(Citrus sinensis)
STRINGXP_006432055.11e-167(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2394944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-29cytokinin response factor 4