PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042614m
Common NameCISIN_1g042614mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 327aa    MW: 37652.2 Da    PI: 6.7902
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042614mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.41e-4711227128
                NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                        FhP+deel+v+yL++kv++ +l++ ++i+e+d+yk++PwdLp+k+  +e+ewyfF++rd+ky++g r+nra++sg+Wkatg+dk++l++ ++
  orange1.1g042614m   1 FHPSDEELIVHYLTNKVASIPLPA-SIIAEIDLYKYNPWDLPRKALFGEEEWYFFTPRDRKYPNGARPNRAAASGFWKATGTDKPILTSfGT 91 
                        9***********************.89***************8877899***************************************9899 PP

                NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                        + +g+kk Lvfy+gr pkg ktdW+mheyrl
  orange1.1g042614m  92 KSIGVKKALVFYEGRPPKGYKTDWIMHEYRL 122
                        99***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-571148IPR003441NAC domain
PROSITE profilePS5100555.8761149IPR003441NAC domain
PfamPF023654.0E-231122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
FHPSDEELIV HYLTNKVASI PLPASIIAEI DLYKYNPWDL PRKALFGEEE WYFFTPRDRK  60
YPNGARPNRA AASGFWKATG TDKPILTSFG TKSIGVKKAL VFYEGRPPKG YKTDWIMHEY  120
RLPDTIAWTP NRKGSMRLDD WVLCRVRQNS INSRKAWDDR NGYSYEAAPG FISKVNELRH  180
MNNTNPNVEM VKSYLYNDCS MLPYIFASRD FTSCCIDTDS NISFQGGDKS CLAAHDEDSL  240
FNPLKRIKLM EKNQQDDCVP PSKKIKEGYV HKEEEIILSV SNESTGETNI YETDHSEGNN  300
FSHDHHQWSH TMQYHQELNN LVFTGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-62115523171NO APICAL MERISTEM PROTEIN
1ut4_B2e-62115523171NO APICAL MERISTEM PROTEIN
1ut7_A2e-62115523171NO APICAL MERISTEM PROTEIN
1ut7_B2e-62115523171NO APICAL MERISTEM PROTEIN
4dul_A2e-62115523171NAC domain-containing protein 19
4dul_B2e-62115523171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027296.21e-146PREDICTED: NAC domain-containing protein 2 isoform X1
TrEMBLA0A067EJG90.0A0A067EJG9_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006428812.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17560810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-76NAC domain containing protein 2