PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g033320m | ||||||||
Common Name | CISIN_1g033320mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 123aa MW: 13461.1 Da PI: 8.0425 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.9 | 4.7e-10 | 10 | 36 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+rtG Cky ++Ck++H++ orange1.1g033320m 10 PGQPECSYFLRTGDCKYKSNCKYHHPK 36 5789*********************96 PP | |||||||
2 | zf-CCCH | 36 | 1.2e-11 | 57 | 81 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C++++r+G+Ck+G+ Ck+ H+ orange1.1g033320m 57 GQNVCSYYSRYGICKFGPACKYDHP 81 6678********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.3E-4 | 9 | 36 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.314 | 9 | 37 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-7 | 11 | 36 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 13 | 38 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 15 | 35 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-7 | 53 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-6 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.558 | 55 | 83 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-9 | 57 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-4 | 60 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MLVDEFPERP GQPECSYFLR TGDCKYKSNC KYHHPKNRIP KSPPCTLSDK GLPLRPGQNV 60 CSYYSRYGIC KFGPACKYDH PIHPDASAEY GLDPPPSFGD STTRQETGMA GTGNGNGSDK 120 NI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440011.1 | 1e-84 | zinc finger CCCH domain-containing protein 43 isoform X2 | ||||
Swissprot | Q9STM4 | 5e-43 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A067FPS8 | 4e-85 | A0A067FPS8_CITSI; Uncharacterized protein | ||||
TrEMBL | V4SZH5 | 4e-85 | V4SZH5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006440009.1 | 2e-83 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15633 | 9 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 2e-45 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g033320m |
Publications ? help Back to Top | |||
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