 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
orange1.1g029411m |
Common Name | CISIN_1g029411mg |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
Family |
TALE |
Protein Properties |
Length: 195aa MW: 22159.9 Da PI: 6.1405 |
Description |
TALE family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g029411m | genome | ICGC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 30.3 | 7.2e-10 | 137 | 170 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55
+yps+ ++ LA+++gL+++q+ +WF N+R ++
orange1.1g029411m 137 WPYPSEPQKLALAESTGLDQKQINNWFINQRKRH 170
58*****************************885 PP
|
2 | ELK | 36.4 | 1.1e-12 | 90 | 111 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
+LK+qLlr Ysg+LgsLkqEF+
orange1.1g029411m 90 DLKDQLLRRYSGSLGSLKQEFL 111
6********************8 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 195 aa
Download sequence Send
to blast |
MSRSSAGTAA SRVGDDPALD QFMEAYCEML TKYEQELTKP FKDASLFLSE IDAQLKTLTV 60 SSNISGQSGS SEEEIDVKDH CIDPLAEDRD LKDQLLRRYS GSLGSLKQEF LKKKKKGKLP 120 KEARQLLLDW WSRHHRWPYP SEPQKLALAE STGLDQKQIN NWFINQRKRH WKPSEDMQFN 180 DISIMNGPEG DAAV*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter. |
Uniprot | TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | EF533702 | 2e-33 | EF533702.1 Glycine max clone BAC GM_WBb098N11, complete sequence. |