PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ERF

Protein Properties

Length: 203aa MW: 22647.6 Da PI: 9.3015

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g028913m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.2	4.2e-18	5	55	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+Wv+eIr+p +r++lg+f tae Aa+a+++a+ ++g orange1.1g028913m 5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAVLMNG 55 59***999.******8.....334*******************977765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	4.03E-22	5	65	No hit	No description
SMART	SM00380	4.7E-39	6	69	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.957	6	63	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.1E-32	6	63	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-20	6	64	IPR016177	DNA-binding domain
Pfam	PF00847	7.6E-11	6	51	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.2E-10	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.2E-10	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MVQSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA VLMNGQNAKT 60 NFPILKPNNP EAEGTKGSSY NIPEKGFSEL LNSKLRKCCK DLSPSLTCLR LDNDNSHIGV 120 WQKRAGSRSG SSWVMRVELG KNKKAQNLEN GLPFPSSRSS PTLVDDEVEA GNGREDEDRI 180 AMQMIEELLN WNCPISSPSS EI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-16	2	64	1	64	ATERF1
3gcc_A	2e-16	2	64	1	64	ATERF1
5wx9_A	4e-16	6	63	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269\|PubMed:15319479}.

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00527	DAP	Transfer from AT5G25390	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269\|PubMed:15319479}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147140	2e-67	EF147140.1 Populus trichocarpa clone WS01228_C18 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006450438.1	1e-149	ethylene-responsive transcription factor SHINE 2
Refseq	XP_006483359.1	1e-149	ethylene-responsive transcription factor SHINE 2
Swissprot	Q3E958	8e-78	SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBL	A0A067FE73	1e-147	A0A067FE73_CITSI; Uncharacterized protein
TrEMBL	A0A2H5P0E8	1e-147	A0A2H5P0E8_CITUN; Uncharacterized protein
TrEMBL	V4TT10	1e-147	V4TT10_9ROSI; Uncharacterized protein
STRING	XP_006483359.1	1e-148	(Citrus sinensis)
STRING	XP_006450438.1	1e-148	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM834	28	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11190.1	5e-71	ERF family protein

Link Out ? help Back to Top
Phytozome	orange1.1g028913m
Entrez Gene	102620575

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486]