PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026806m
Common NameCISIN_1g026806mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 234aa    MW: 26200.2 Da    PI: 7.5716
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026806mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_155.99.3e-18108170264
                        XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
             bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                        +elk ++r+q+NRe+ArrsR RK++e ++L++ v+eL+ae   Lk+el +l+ ++ klk+e+e
  orange1.1g026806m 108 EELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENE 170
                        79**********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.8E-15104167No hitNo description
SMARTSM003382.5E-16107171IPR004827Basic-leucine zipper domain
PfamPF001709.6E-15108170IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.656109172IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.94E-9111166No hitNo description
CDDcd147025.95E-12114162No hitNo description
PROSITE patternPS000360114129IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MKAADSICGN NNAYNASNSS ASVFEESEES DESIDINRDI FATKREKINQ MHEADDDILA  60
QKNVTVCHSN TTNLASRDSA ESMIKTTQNS GIVINESGTG ARITKDGEEL KLAKRRQSNR  120
ESARRSRMRK QEEFKKLQKA VEELKAESAV LKDELLSLSA KYGKLKDENE AIVEELKLRH  180
RADAISYLEA LMPHNLMNGE SYRREENLAL FQSRYASSSS LNVKASSSKK FRQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115LKLAKRR
2123130RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487183.11e-136light-inducible protein CPRF3-like
RefseqXP_024035418.11e-136light-inducible protein CPRF3-like
TrEMBLA0A067EKJ51e-167A0A067EKJ5_CITSI; Uncharacterized protein
STRINGXP_006487183.11e-136(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72742643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-18G-box binding factor 1