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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
orange1.1g024428m |
| Common Name | CISIN_1g024428mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
TALE |
| Protein Properties |
Length: 269aa MW: 30274.3 Da PI: 6.3645 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g024428m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 22.8 | 1.5e-07 | 193 | 228 | 21 | 55 |
HSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 21 knrypsae.ereeLAkklgLterqVkvWFqNrRake 55
k +yps+e ++ LA+++gL+ +q+ +WF N+R ++
orange1.1g024428m 193 KWPYPSQEsQKLALAESTGLDSKQINNWFINQRKRH 228
5689987626779********************885 PP
|
| 2 | ELK | 38 | 3.5e-13 | 147 | 168 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK qLlr Ysg+L+sLkqEF+
orange1.1g024428m 147 ELKGQLLRRYSGCLSSLKQEFM 168
9********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009934 | Biological Process | regulation of meristem structural organization |
| GO:0048440 | Biological Process | carpel development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 269 aa
Download sequence Send
to blast |
METNYGSGAS SSVKAKIMAH PHYHRLLAAY ANCQKVGAPP EVVARLEEVC ASAASMGSGG 60
SSCIGQDPAL DQFMEAYCEM LTKYEQELSK PFKEAMSFLQ KIESQFKSLS ISSPNSASSE 120
AIDRNGSSEE DFDVNIDFID PQAEDQELKG QLLRRYSGCL SSLKQEFMKK RKKGKLPKEA 180
RQQLLDWWSK HYKWPYPSQE SQKLALAEST GLDSKQINNW FINQRKRHWK PSEDMQFMVM 240
DATQPQYYID STVMGNPFPM DLSPAPLL*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 162 | 171 | LKQEFMKKRK |
| 2 | 168 | 172 | KKRKK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter. |
| Uniprot | TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
