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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
orange1.1g023821m |
| Common Name | CISIN_1g016791mg, LOC102611907 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
NAC |
| Protein Properties |
Length: 277aa MW: 30471 Da PI: 8.6962 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g023821m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 39.5 | 1.7e-12 | 5 | 37 | 96 | 128 |
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
++++vg+kk Lvfy g+ pkg kt+W+mheyrl
orange1.1g023821m 5 SNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 37
5789***************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009753 | Biological Process | response to jasmonic acid |
| GO:0045995 | Biological Process | regulation of embryonic development |
| GO:0048317 | Biological Process | seed morphogenesis |
| GO:0080060 | Biological Process | integument development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MSSGSNQKVG VKKALVFYGG KPPKGIKTNW IMHEYRLTDN KVSNKPPGCD LGNKKNSLRL 60
DDWVLCRIYK KNNLHRPLMD HDKDDSMDDM LGVHIPPSLM ISSQQQNTNL KLHMPTRGAN 120
LNSFGALLVN EPNFFEGLTS HDGINNNSSN NNNGSISSHH HHQFAASSSS KLQVQAMDSL 180
KRTLPSSSWT DHEDVPSGGA LVNKRFHGEN NVNDDQSIEG RTDHHGNGSS SIATLLSQLP 240
QTPPPPSIHQ QAILGSLGDG IFRQPYHQLP GMNWYS*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-18 | 3 | 73 | 108 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-18 | 3 | 73 | 108 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-18 | 3 | 73 | 108 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-18 | 3 | 73 | 108 | 167 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-18 | 1 | 73 | 109 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 2e-18 | 1 | 73 | 109 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 2e-18 | 1 | 73 | 109 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 2e-18 | 1 | 73 | 109 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 2e-18 | 1 | 73 | 109 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 2e-18 | 1 | 73 | 109 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 2e-18 | 1 | 73 | 109 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 2e-18 | 1 | 73 | 109 | 170 | NAC domain-containing protein 19 |
| 4dul_A | 2e-18 | 3 | 73 | 108 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 2e-18 | 3 | 73 | 108 | 167 | NAC domain-containing protein 19 |
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