PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g023721m
Common NameCISIN_1g023721mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 279aa    MW: 31650.7 Da    PI: 10.0359
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g023721mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.64.4e-133761796
                       E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                        +p  fa++ + + + +k ++++d  gr+W+ k+  +   g +v++++W++F+  + L+ gDf+vFk++g+s f   vk+
  orange1.1g023721m  3 AIPPAFAKHLN-V-TVPKHVIIRDYAGRQWRGKM--EEVEGVIVIKDCWERFACVHSLELGDFLVFKYNGSSLF--DVKI 76
                       599***94444.3.46678***************..9**99***************************997777..5554 PP
2B3573.6e-181902731699
                        EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..EEEEE-S CS
                 B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelvvkvfrk 99 
                        + ++ + +++hg+k   + +++l+d++gr+W vk+++r + gr+v+t+GW++F ++++L++gD +vF+  l++  +++e++v+v+rk
  orange1.1g023721m 190 VNVSVRVVRSHGIK--LEPEMMLRDQNGRKWPVKISFRTN-GRIVITGGWSDFWREQKLEAGDKCVFEfvLTRGnMSKEMKVQVVRK 273
                        56677889999866..4449***************98777.589************************76555559*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0045180IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-15382IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-15382IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-10372IPR003340B3 DNA binding domain
CDDcd100171.14E-10477No hitNo description
CDDcd100172.11E-13169272No hitNo description
Gene3DG3DSA:2.40.330.105.0E-22173273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20173272IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.76175274IPR003340B3 DNA binding domain
SMARTSM010193.4E-15178274IPR003340B3 DNA binding domain
PfamPF023627.6E-16191273IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MKAIPPAFAK HLNVTVPKHV IIRDYAGRQW RGKMEEVEGV IVIKDCWERF ACVHSLELGD  60
FLVFKYNGSS LFDVKIYGIN GCLKEGTNTT HHKKETPIAD MNAIPVKKEI GREAEQTSIM  120
DDPSCNQDDL EIMLISSGKR GGSSVASRVK TRLRDEKDTG EDRAFKAARL VVPKNPHFVS  180
VFSQYSRYAV NVSVRVVRSH GIKLEPEMML RDQNGRKWPV KISFRTNGRI VITGGWSDFW  240
REQKLEAGDK CVFEFVLTRG NMSKEMKVQV VRKMKTCL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425800.10.0putative B3 domain-containing protein At5g66980
RefseqXP_006466673.10.0putative B3 domain-containing protein At5g66980
TrEMBLA0A067GIB50.0A0A067GIB5_CITSI; Uncharacterized protein
STRINGXP_006466673.10.0(Citrus sinensis)
STRINGXP_006425800.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-32B3 family protein