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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
orange1.1g016435m |
| Common Name | CISIN_1g016435mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
NAC |
| Protein Properties |
Length: 390aa MW: 44525.1 Da PI: 5.5655 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g016435m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 104.1 | 1.8e-32 | 5 | 133 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
+GfrFhPtdee++ L+ k ++ + +++ ++ike+d+y++eP++Lp + +++ee+ wyfF++ k++++kr +r tk+gyWk+tg+ +
orange1.1g016435m 5 VGFRFHPTDEEIIL-LLTMKRRDPTgFSV-RTIKEIDLYSFEPRELPchSDIQSEEEVWYFFCEPCYKNSESKRVHRRTKEGYWKKTGRGSN 94
7************5.45555554443777.78***************6448888999*********************************** PP
NAM 92 vlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
+ +k k+e++g+kk L f + a + + t+Wv+he ++
orange1.1g016435m 95 INRKyKTEVIGTKKFLSFSRDdAAAQKNTTEWVIHEIAV 133
**9988999**********76356667899******875 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MDSLVGFRFH PTDEEIILLL TMKRRDPTGF SVRTIKEIDL YSFEPRELPC HSDIQSEEEV 60
WYFFCEPCYK NSESKRVHRR TKEGYWKKTG RGSNINRKYK TEVIGTKKFL SFSRDDAAAQ 120
KNTTEWVIHE IAVEDSPDFK KDFVVCRLER KREKKTLGVV STKRKREKTL GVVSSKRKRD 180
KKLGVSTSDG DQSCQNLTSK RSHVAEDSNR NHVAEKVDLV STRNHVAENI VLVPEPQVRD 240
HSISCYRNHV AENIVEDSVE AETRRLAELN RRGDGYDGRN DASVSAVQSS DYPEQESSDY 300
NGSSCGSGLL NSQLDGEQVG GQCNSRRDFQ NEYSPEETGE TTPYFLTSKS DEGVYVEDGS 360
DANSETESFN EWVNMVFDYQ ILKEDIRSL*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 9e-17 | 6 | 152 | 20 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 9e-17 | 6 | 152 | 20 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 9e-17 | 6 | 152 | 20 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 9e-17 | 6 | 152 | 20 | 166 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-16 | 6 | 152 | 23 | 169 | NAC domain-containing protein 19 |
| 3swm_B | 1e-16 | 6 | 152 | 23 | 169 | NAC domain-containing protein 19 |
| 3swm_C | 1e-16 | 6 | 152 | 23 | 169 | NAC domain-containing protein 19 |
| 3swm_D | 1e-16 | 6 | 152 | 23 | 169 | NAC domain-containing protein 19 |
| 3swp_A | 1e-16 | 6 | 152 | 23 | 169 | NAC domain-containing protein 19 |
| 3swp_B | 1e-16 | 6 | 152 | 23 | 169 | NAC domain-containing protein 19 |
| 3swp_C | 1e-16 | 6 | 152 | 23 | 169 | NAC domain-containing protein 19 |
| 3swp_D | 1e-16 | 6 | 152 | 23 | 169 | NAC domain-containing protein 19 |
| 4dul_A | 9e-17 | 6 | 152 | 20 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 9e-17 | 6 | 152 | 20 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 162 | 181 | KRKREKTLGVVSSKRKRDKK |
| 2 | 163 | 178 | RKREKTLGVVSSKRKR |
