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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g003650m | ||||||||
Common Name | CISIN_1g002476mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | CAMTA | ||||||||
Protein Properties | Length: 806aa MW: 90005.8 Da PI: 7.0279 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 163.5 | 3.7e-51 | 25 | 142 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 ++e k+rwl+++ei+aiL n + +++ +++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ p orange1.1g003650m 25 MEEaKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSP 116 55669*************************************************************************************** PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 tf rrcywlL+++le+ivlvhy+e++ orange1.1g003650m 117 TFVRRCYWLLDKTLENIVLVHYRETH 142 ***********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 74.336 | 21 | 147 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.0E-74 | 24 | 142 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.0E-45 | 27 | 140 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 7.6E-4 | 364 | 455 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 8.9E-5 | 366 | 452 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 1.82E-14 | 367 | 453 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 1.27E-13 | 551 | 661 | No hit | No description |
Pfam | PF12796 | 3.9E-6 | 552 | 631 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 9.7E-15 | 552 | 664 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.23E-15 | 560 | 665 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 14.769 | 569 | 634 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 9.8E-6 | 602 | 631 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.033 | 602 | 634 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50096 | 6.797 | 750 | 776 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.803 | 766 | 795 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 806 aa Download sequence Send to blast |
MAELLVGSEI HGFHTLKDLD VANMMEEAKT RWLRPNEIHA ILCNSKYFSI NAKPVNLPKS 60 GTVVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG NEERIHVYYA HGEDSPTFVR 120 RCYWLLDKTL ENIVLVHYRE THEGTPATPP NSHSSSISDQ SAPLLLSEEF NSGAGHAYSA 180 GGKELQAPNE SLTVQNHEMR LHELNTLEWD DLVVTNDSND STEPRGDKFS HFDQQNHTAI 240 KGAASNGSFF PSHDSYAEVS SGGCLTSLSQ PIDRSNNTQF NNLDGVYSEL MGTQSSVSSQ 300 RNEFGEVCTG DSLDILAGDG LQSQDSFGKW MNYIMTDSPG SVDDPVLEPS ISSGHHQFTV 360 PEHLFSITDV SPAWAFSNEK TKILVTGFFH KDCLHLSKSN MFCVCGEVRV PAEFVQAGVY 420 RCFLPPHSPG LFLLYMSLDG HKPISQVLNF EYRSPQLHAP VASSEDKSKW EEFQVQMRLA 480 HLLFSSFKGL NILSSKVPPN SLKEAKKFAS KSTCISNSWA YLFKSVGDKR TSLPEAKDSF 540 FELTLKSKLK EWLLERVVEG SKTTEYDVHG QGVIHLCAML GYTWAILLFS WSGLSLDFRD 600 KYGWTALHWA AYYGREKMVV DLLSAGAKPN LVTDPTSQNP GGLNAADIAS KKGFDGLAAF 660 LSEQALVAQF NDMTLAGNIS GSLQTGSTIT VDTQNLTEDE VYLKDTLSAY RTAAEAAARI 720 QAAFREHSLK VQTKAIRFSS PEEEAQNIIA ALKIQHAFRN FEVRKKMAAA ARIQHRFRSW 780 KVRKEFLNMR RQAIKIQVIL LCIVL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.2212 | 1e-172 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006488865.1 | 0.0 | calmodulin-binding transcription activator 5 | ||||
Refseq | XP_024036941.1 | 0.0 | calmodulin-binding transcription activator 5 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A067G0F2 | 0.0 | A0A067G0F2_CITSI; Uncharacterized protein | ||||
STRING | XP_006488865.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g003650m |
Publications ? help Back to Top | |||
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