PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g003098m

Common Name

CISIN_1g002476mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

CAMTA

Protein Properties

Length: 849aa MW: 95474.5 Da PI: 7.175

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g003098m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	114.7	5e-36	2	73	47	118
CG-1 47 vryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 +r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ ptf rrcywlL+++le+ivlvhy+e++ orange1.1g003098m 2 LRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHYRETH 73 79*******************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	3.2E-28	1	73	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	54.837	1	78	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.1E-30	2	71	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	8.2E-4	295	386	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	9.5E-5	297	383	IPR002909	IPT domain
SuperFamily	SSF81296	1.96E-14	298	384	IPR014756	Immunoglobulin E-set
CDD	cd00204	5.93E-14	482	592	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.0E-14	483	595	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	4.2E-6	483	562	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.32E-15	491	596	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.769	500	565	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.033	533	565	IPR002110	Ankyrin repeat
SMART	SM00248	9.8E-6	533	562	IPR002110	Ankyrin repeat
SMART	SM00015	340	643	665	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	2.28E-7	644	747	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	6.797	681	707	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	22	696	718	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.803	697	726	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.21	699	717	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0011	719	741	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.487	720	744	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.9E-4	721	740	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	13	801	823	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.968	803	831	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 849 aa Download sequence Send to blast
MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV GNEERIHVYY AHGEDSPTFV RRCYWLLDKT 60 LENIVLVHYR ETHEGTPATP PNSHSSSISD QSAPLLLSEE FNSGAGHAYS AGGKELQAPN 120 ESLTVQNHEM RLHELNTLEW DDLVVTNDSN DSTEPRGDKF SHFDQQNHTA IKGAASNGSF 180 FPSHDSYAEV SSGGCLTSLS QPIDRSNNTQ FNNLDGVYSE LMGTQSSVSS QRNEFGEVCT 240 GDSLDILAGD GLQSQDSFGK WMNYIMTDSP GSVDDPVLEP SISSGHHQFT VPEHLFSITD 300 VSPAWAFSNE KTKILVTGFF HKDCLHLSKS NMFCVCGEVR VPAEFVQAGV YRCFLPPHSP 360 GLFLLYMSLD GHKPISQVLN FEYRSPQLHA PVASSEDKSK WEEFQVQMRL AHLLFSSFKG 420 LNILSSKVPP NSLKEAKKFA SKSTCISNSW AYLFKSVGDK RTSLPEAKDS FFELTLKSKL 480 KEWLLERVVE GSKTTEYDVH GQGVIHLCAM LGYTWAILLF SWSGLSLDFR DKYGWTALHW 540 AAYYGREKMV VDLLSAGAKP NLVTDPTSQN PGGLNAADIA SKKGFDGLAA FLSEQALVAQ 600 FNDMTLAGNI SGSLQTGSTI TVDTQNLTED EVYLKDTLSA YRTAAEAAAR IQAAFREHSL 660 KVQTKAIRFS SPEEEAQNII AALKIQHAFR NFEVRKKMAA AARIQHRFRS WKVRKEFLNM 720 RRQAIKIQAA FRGFQVRKQY GKILWSVGVL EKAILRWRLK RKGFRGLQVD RVEVEAVSDP 780 NHEGDAEEDF YRASRKQAEE RVERSVVRVQ SMFRSKKAQE EYRRMKLAHD QAKLEYEGLL 840 DPDMEMAD*

Sequence ? help Back to Top

Protein Sequence Length: 849 aa Download sequence Send to blast

MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV GNEERIHVYY AHGEDSPTFV RRCYWLLDKT  60
LENIVLVHYR ETHEGTPATP PNSHSSSISD QSAPLLLSEE FNSGAGHAYS AGGKELQAPN  120
ESLTVQNHEM RLHELNTLEW DDLVVTNDSN DSTEPRGDKF SHFDQQNHTA IKGAASNGSF  180
FPSHDSYAEV SSGGCLTSLS QPIDRSNNTQ FNNLDGVYSE LMGTQSSVSS QRNEFGEVCT  240
GDSLDILAGD GLQSQDSFGK WMNYIMTDSP GSVDDPVLEP SISSGHHQFT VPEHLFSITD  300
VSPAWAFSNE KTKILVTGFF HKDCLHLSKS NMFCVCGEVR VPAEFVQAGV YRCFLPPHSP  360
GLFLLYMSLD GHKPISQVLN FEYRSPQLHA PVASSEDKSK WEEFQVQMRL AHLLFSSFKG  420
LNILSSKVPP NSLKEAKKFA SKSTCISNSW AYLFKSVGDK RTSLPEAKDS FFELTLKSKL  480
KEWLLERVVE GSKTTEYDVH GQGVIHLCAM LGYTWAILLF SWSGLSLDFR DKYGWTALHW  540
AAYYGREKMV VDLLSAGAKP NLVTDPTSQN PGGLNAADIA SKKGFDGLAA FLSEQALVAQ  600
FNDMTLAGNI SGSLQTGSTI TVDTQNLTED EVYLKDTLSA YRTAAEAAAR IQAAFREHSL  660
KVQTKAIRFS SPEEEAQNII AALKIQHAFR NFEVRKKMAA AARIQHRFRS WKVRKEFLNM  720
RRQAIKIQAA FRGFQVRKQY GKILWSVGVL EKAILRWRLK RKGFRGLQVD RVEVEAVSDP  780
NHEGDAEEDF YRASRKQAEE RVERSVVRVQ SMFRSKKAQE EYRRMKLAHD QAKLEYEGLL  840
DPDMEMAD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.2212	8e-49	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488865.1	0.0	calmodulin-binding transcription activator 5
Refseq	XP_024036941.1	0.0	calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A067FWY9	0.0	A0A067FWY9_CITSI; Uncharacterized protein
STRING	XP_006488865.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	orange1.1g003098m

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]