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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g003098m | ||||||||
Common Name | CISIN_1g002476mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | CAMTA | ||||||||
Protein Properties | Length: 849aa MW: 95474.5 Da PI: 7.175 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 114.7 | 5e-36 | 2 | 73 | 47 | 118 |
CG-1 47 vryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 +r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ ptf rrcywlL+++le+ivlvhy+e++ orange1.1g003098m 2 LRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRRCYWLLDKTLENIVLVHYRETH 73 79*******************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01076 | 3.2E-28 | 1 | 73 | IPR005559 | CG-1 DNA-binding domain |
PROSITE profile | PS51437 | 54.837 | 1 | 78 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.1E-30 | 2 | 71 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 8.2E-4 | 295 | 386 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 9.5E-5 | 297 | 383 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 1.96E-14 | 298 | 384 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 5.93E-14 | 482 | 592 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.0E-14 | 483 | 595 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 4.2E-6 | 483 | 562 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.32E-15 | 491 | 596 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 14.769 | 500 | 565 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.033 | 533 | 565 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 9.8E-6 | 533 | 562 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 340 | 643 | 665 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 2.28E-7 | 644 | 747 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 6.797 | 681 | 707 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 22 | 696 | 718 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.803 | 697 | 726 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.21 | 699 | 717 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0011 | 719 | 741 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.487 | 720 | 744 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.9E-4 | 721 | 740 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 13 | 801 | 823 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.968 | 803 | 831 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 849 aa Download sequence Send to blast |
MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV GNEERIHVYY AHGEDSPTFV RRCYWLLDKT 60 LENIVLVHYR ETHEGTPATP PNSHSSSISD QSAPLLLSEE FNSGAGHAYS AGGKELQAPN 120 ESLTVQNHEM RLHELNTLEW DDLVVTNDSN DSTEPRGDKF SHFDQQNHTA IKGAASNGSF 180 FPSHDSYAEV SSGGCLTSLS QPIDRSNNTQ FNNLDGVYSE LMGTQSSVSS QRNEFGEVCT 240 GDSLDILAGD GLQSQDSFGK WMNYIMTDSP GSVDDPVLEP SISSGHHQFT VPEHLFSITD 300 VSPAWAFSNE KTKILVTGFF HKDCLHLSKS NMFCVCGEVR VPAEFVQAGV YRCFLPPHSP 360 GLFLLYMSLD GHKPISQVLN FEYRSPQLHA PVASSEDKSK WEEFQVQMRL AHLLFSSFKG 420 LNILSSKVPP NSLKEAKKFA SKSTCISNSW AYLFKSVGDK RTSLPEAKDS FFELTLKSKL 480 KEWLLERVVE GSKTTEYDVH GQGVIHLCAM LGYTWAILLF SWSGLSLDFR DKYGWTALHW 540 AAYYGREKMV VDLLSAGAKP NLVTDPTSQN PGGLNAADIA SKKGFDGLAA FLSEQALVAQ 600 FNDMTLAGNI SGSLQTGSTI TVDTQNLTED EVYLKDTLSA YRTAAEAAAR IQAAFREHSL 660 KVQTKAIRFS SPEEEAQNII AALKIQHAFR NFEVRKKMAA AARIQHRFRS WKVRKEFLNM 720 RRQAIKIQAA FRGFQVRKQY GKILWSVGVL EKAILRWRLK RKGFRGLQVD RVEVEAVSDP 780 NHEGDAEEDF YRASRKQAEE RVERSVVRVQ SMFRSKKAQE EYRRMKLAHD QAKLEYEGLL 840 DPDMEMAD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.2212 | 8e-49 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006488865.1 | 0.0 | calmodulin-binding transcription activator 5 | ||||
Refseq | XP_024036941.1 | 0.0 | calmodulin-binding transcription activator 5 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A067FWY9 | 0.0 | A0A067FWY9_CITSI; Uncharacterized protein | ||||
STRING | XP_006488865.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g003098m |
Publications ? help Back to Top | |||
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