PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31290.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 351aa    MW: 39571.1 Da    PI: 5.5523
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31290.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.7e-28958150
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  mrna31290.1-v1.0-hybrid  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                             79********************************************9997 PP
2K-box24.41.2e-091281911679
                    K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                              + qqe+  L++++++ ++++R +  + L+  s+ eL++ eq+Le+ l+++ ++K+ ll +q++ 
  mrna31290.1-v1.0-hybrid 128 EIQQEIGGLQQQLQMAEEQIRIYEPDPLKITSMAELESSEQRLENTLSRVMQRKEYLLSNQLSS 191
                              689**********************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.899161IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-30281IPR002100Transcription factor, MADS-box
CDDcd002652.74E-36275No hitNo description
PRINTSPR004044.0E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-263859IPR002100Transcription factor, MADS-box
PfamPF014865.7E-6128192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK  60
RRIEDVFTRY INLPDQEREH AIIFPDHNRL PDLQNKEVRY MACSNYLLRT LQQLRSENDI  120
ALQLAKFEIQ QEIGGLQQQL QMAEEQIRIY EPDPLKITSM AELESSEQRL ENTLSRVMQR  180
KEYLLSNQLS SFDSSGIQQV LPGSFENEVA GWLANGGHNH SQIYDASAPL DHQLRNLSSS  240
LYDPFSQGTS SNGGADPSSM GECHVSVTNG SDGELPTWPQ PYTSSGHHSN LMQPSLMPQY  300
QQAMVSSNMP EIIPHEQVDI PVSSSNVQAY NDGADNYHDQ NNKVPQLNGH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-16189190MEF2 CHIMERA
6bz1_B1e-16189190MEF2 CHIMERA
6bz1_C1e-16189190MEF2 CHIMERA
6bz1_D1e-16189190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31290.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465522.10.0PREDICTED: MADS-box transcription factor 5 isoform X1
SwissprotQ9LM461e-113AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A2P6PHY10.0A0A2P6PHY1_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004300656.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-108AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]