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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna30750.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LFY | ||||||||
Protein Properties | Length: 378aa MW: 42288.6 Da PI: 8.5433 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 507.9 | 4.8e-155 | 22 | 364 | 43 | 386 |
FLO_LFY 43 aaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekk 128 +aa r lee+f+ayGvr + +ak+a+lGftvstL++mkdeeldd+m+s+s++ r++llvGeryGikaavra+rrr eee mrna30750.1-v1.0-hybrid 22 TAAGYSRALEEMFRAYGVRSYVAAKMADLGFTVSTLLEMKDEELDDMMNSVSQVSRVELLVGERYGIKAAVRAQRRRRLEEE---- 103 22333689******************************************************************99988866.... PP FLO_LFY 129 rrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeed 214 r+ ls d+ ++d+lsqeglseepvq eke++gsgge ++e + aa+ ++k++ ++ ++ ++++ ++ d+de+ee++ mrna30750.1-v1.0-hybrid 104 PRHALSGDT-VVIDSLSQEGLSEEPVQLEKEMVGSGGEAACEG-VRAAK-----KRKRELRRIRRGGGHRSS-NEGVDDDENEENE 181 344689996.58***********************99994433.33332.....222222221222222222.2223333333333 PP FLO_LFY 215 edeeg...........sgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfrya 289 + +g ++ +g++rqrehPfivte+gev rgk nGLDYLf+Ly +C++fL+qvqkiak+rGekcPtk+tn+vfrya mrna30750.1-v1.0-hybrid 182 DGINGgggeqpsralaKRGGGRKRQREHPFIVTEAGEVVRGKSNGLDYLFHLYKECHQFLTQVQKIAKKRGEKCPTKMTNKVFRYA 267 3322235677888887777788**************************************************************** PP FLO_LFY 290 kkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLr 375 k+ ga++inkPkmrhYvhCYalhcLdee snalrr+ k rg+n+Gaw qacy+ +v+iaa +gwdida+f++hp+Ls+WYvPtkLr mrna30750.1-v1.0-hybrid 268 KEEGANHINKPKMRHYVHCYALHCLDEERSNALRRECKLRGDNIGAWMQACYRSVVEIAAPRGWDIDAIFSEHPQLSVWYVPTKLR 353 ************************************************************************************** PP FLO_LFY 376 qLChlerskas 386 qLCh+er++a+ mrna30750.1-v1.0-hybrid 354 QLCHAERNNAT 364 ********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 3.2E-150 | 1 | 363 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MDPDASTATL FKWDLRFAPQ QTAAGYSRAL EEMFRAYGVR SYVAAKMADL GFTVSTLLEM 60 KDEELDDMMN SVSQVSRVEL LVGERYGIKA AVRAQRRRRL EEEPRHALSG DTVVIDSLSQ 120 EGLSEEPVQL EKEMVGSGGE AACEGVRAAK KRKRELRRIR RGGGHRSSNE GVDDDENEEN 180 EDGINGGGGE QPSRALAKRG GGRKRQREHP FIVTEAGEVV RGKSNGLDYL FHLYKECHQF 240 LTQVQKIAKK RGEKCPTKMT NKVFRYAKEE GANHINKPKM RHYVHCYALH CLDEERSNAL 300 RRECKLRGDN IGAWMQACYR SVVEIAAPRG WDIDAIFSEH PQLSVWYVPT KLRQLCHAER 360 NNATASSSAS GGKDTAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 2e-91 | 202 | 362 | 2 | 162 | PROTEIN LEAFY |
2vy2_A | 2e-91 | 202 | 362 | 2 | 162 | PROTEIN LEAFY |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May regulate indeterminacy during leaf and flower development. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna30750.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN788260 | 0.0 | JN788260.1 Fragaria x ananassa LEAFY like protein 2 (LFY-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011460336.1 | 0.0 | PREDICTED: protein UNIFOLIATA-like | ||||
Swissprot | O04064 | 1e-148 | FLLH_POPTR; Floricaula/leafy homolog | ||||
Swissprot | O48559 | 1e-148 | UNI_PEA; Protein UNIFOLIATA | ||||
TrEMBL | A0A184XYZ3 | 0.0 | A0A184XYZ3_FRAAN; LEAFY-like protein 1 | ||||
STRING | XP_004300371.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8033 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 4e-90 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | mrna30750.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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