PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna29503.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 310aa    MW: 35288.1 Da    PI: 6.3865
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna29503.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.11.8e-26959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+ien   rqvtfskRr g+lKKA+EL +LCdaevavi+fs+tgkl+e+ss
  mrna29503.1-v1.0-hybrid  9 KKIENINSRQVTFSKRRGGLLKKAQELAILCDAEVAVIVFSNTGKLFEFSS 59
                             68***********************************************96 PP
2K-box72.61.2e-241292272100
                    K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                              ++s++  +e++ +e+  +e++ Lk+e+e+Lq++q +llG+dL+sLslkeLq+Le+qL ++l ++++kK++ll+eq+e+++ +e+++
  mrna29503.1-v1.0-hybrid 129 ESSETAPVESRAEEEHPKEVDVLKDELEKLQSKQLRLLGNDLSSLSLKELQKLEDQLAEGLFSVKEKKEKLLMEQLEQSRVQEQRA 214
                              556666699999999*********************************************************************** PP

                    K-box  88 qeenkaLrkklee 100
                                en++Lrk++ee
  mrna29503.1-v1.0-hybrid 215 IVENETLRKQIEE 227
                              **********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.623161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-27261IPR002100Transcription factor, MADS-box
CDDcd002651.54E-35259No hitNo description
PRINTSPR004043.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-18137225IPR002487Transcription factor, K-box
PROSITE profilePS5129713.12141231IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRGKIEIKK IENINSRQVT FSKRRGGLLK KAQELAILCD AEVAVIVFSN TGKLFEFSSA  60
GGCFYFSSFL LDLCEGSWKN VLVRDSDFLY IVDFGRVPLW IVIIDEQFRA MYSAIHMKRT  120
IARYNKCYES SETAPVESRA EEEHPKEVDV LKDELEKLQS KQLRLLGNDL SSLSLKELQK  180
LEDQLAEGLF SVKEKKEKLL MEQLEQSRVQ EQRAIVENET LRKQIEELRR LYPQAAHAVP  240
SYLEYYPVQK QNSPVNHGAK SPDLVSNFAF DNGDSDTTLQ LGLPSETYRK RKAPERESHS  300
NDSGSQLGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-17160160MEF2C
5f28_B5e-17160160MEF2C
5f28_C5e-17160160MEF2C
5f28_D5e-17160160MEF2C
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna29503.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0831020.0KM083102.1 Rosa canina MADS box transcription factor AGL15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307242.11e-167PREDICTED: agamous-like MADS-box protein AGL15
TrEMBLA0A2P6S8441e-145A0A2P6S844_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004307242.11e-167(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.15e-48AGAMOUS-like 15